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The map label for this gene is yiaD [H]

Identifier: 110678313

GI number: 110678313

Start: 930304

End: 930969

Strand: Direct

Name: yiaD [H]

Synonym: RD1_0967

Alternate gene names: 110678313

Gene position: 930304-930969 (Clockwise)

Preceding gene: 110678312

Following gene: 110678314

Centisome position: 22.51

GC content: 59.31

Gene sequence:

>666_bases
ATGAAATTATTCAGTAAACCAGTCGCTTTGGCGATGGCAGGCGTTGTGAGTTTGGCCGCCTGCACAGATCCCGCGCAATT
GAACCAAAACCCTAACTTATCCAAGACGCAGCAAGGCGCGTTGATCGGGGCAGGAGCGGGTGCGCTGGCGGGCGCGTTGT
CCCGCGGGGATGGCAACCGGGACAGGGGCGCGGTGATCGGCGCGGTCGTCGGCGGCGCGATTGGCGCAGGCATCGGGTAC
AATCTTGACCAGCAGGAAGCGGAGTTGCGCCGCGATCTTGGCAATGATGATGTGCAGATAACCAACACCGGGGATCGTCT
GATCGTGAGCCTGCCGCAGGATTTGCTTTTCGCGACGGACAGTTTTTCGGTACGTCCGGATTTGCAGAACGACCTTTATA
CCGTTGCGGGCAGCCTGCAAAACTATCCGGCCTCGACCATTCAGGTCATCGGTCACACGGATAGCGATGGAGACGCCGCT
TACAATCAACGGCTCTCTGAGCGGCGCGCGGGGTCGGTTGCTGGCATCCTGATGGATGCTGGCGTCACACCATCACGGCT
GCAGACCATTGGACGCGGAGAGAGCCAGCCTGTTGCGAGCAACCTCAACGAAGCAGGCAAGGCGCAAAACCGTCGGGTCG
AGATCATCATTTTGCCAACCGCATAA

Upstream 100 bases:

>100_bases
GATTTTTCCCCTTTGTTTGCCGGGCCGCGTATCCCATATATGCTGACGGACCATAACGCCGCCCCGCCCGAACGGGGCGG
CAACCGAGAAGGCAGTAAAT

Downstream 100 bases:

>100_bases
CCCATCACCAAAGTGAAAAAGGCCTCGCCCTGAGGGTGGGGCCTCTTGTCTTTTGCGATGGGCGCATCACTGTAAGTAAA
AATAATCAAGAGGTTCTAAA

Product: OmpA family domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKLFSKPVALAMAGVVSLAACTDPAQLNQNPNLSKTQQGALIGAGAGALAGALSRGDGNRDRGAVIGAVVGGAIGAGIGY
NLDQQEAELRRDLGNDDVQITNTGDRLIVSLPQDLLFATDSFSVRPDLQNDLYTVAGSLQNYPASTIQVIGHTDSDGDAA
YNQRLSERRAGSVAGILMDAGVTPSRLQTIGRGESQPVASNLNEAGKAQNRRVEIIILPTA

Sequences:

>Translated_221_residues
MKLFSKPVALAMAGVVSLAACTDPAQLNQNPNLSKTQQGALIGAGAGALAGALSRGDGNRDRGAVIGAVVGGAIGAGIGY
NLDQQEAELRRDLGNDDVQITNTGDRLIVSLPQDLLFATDSFSVRPDLQNDLYTVAGSLQNYPASTIQVIGHTDSDGDAA
YNQRLSERRAGSVAGILMDAGVTPSRLQTIGRGESQPVASNLNEAGKAQNRRVEIIILPTA
>Mature_221_residues
MKLFSKPVALAMAGVVSLAACTDPAQLNQNPNLSKTQQGALIGAGAGALAGALSRGDGNRDRGAVIGAVVGGAIGAGIGY
NLDQQEAELRRDLGNDDVQITNTGDRLIVSLPQDLLFATDSFSVRPDLQNDLYTVAGSLQNYPASTIQVIGHTDSDGDAA
YNQRLSERRAGSVAGILMDAGVTPSRLQTIGRGESQPVASNLNEAGKAQNRRVEIIILPTA

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=224, Percent_Identity=41.0714285714286, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22865; Mature: 22865

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFSKPVALAMAGVVSLAACTDPAQLNQNPNLSKTQQGALIGAGAGALAGALSRGDGNR
CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCEEECCHHHHHHHHHCCCCCC
DRGAVIGAVVGGAIGAGIGYNLDQQEAELRRDLGNDDVQITNTGDRLIVSLPQDLLFATD
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHEEECC
SFSVRPDLQNDLYTVAGSLQNYPASTIQVIGHTDSDGDAAYNQRLSERRAGSVAGILMDA
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
GVTPSRLQTIGRGESQPVASNLNEAGKAQNRRVEIIILPTA
CCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLFSKPVALAMAGVVSLAACTDPAQLNQNPNLSKTQQGALIGAGAGALAGALSRGDGNR
CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHCCCEEECCHHHHHHHHHCCCCCC
DRGAVIGAVVGGAIGAGIGYNLDQQEAELRRDLGNDDVQITNTGDRLIVSLPQDLLFATD
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHEEECC
SFSVRPDLQNDLYTVAGSLQNYPASTIQVIGHTDSDGDAAYNQRLSERRAGSVAGILMDA
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
GVTPSRLQTIGRGESQPVASNLNEAGKAQNRRVEIIILPTA
CCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]