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The map label for this gene is yhdW [H]

Identifier: 110678289

GI number: 110678289

Start: 911908

End: 912672

Strand: Direct

Name: yhdW [H]

Synonym: RD1_0942

Alternate gene names: 110678289

Gene position: 911908-912672 (Clockwise)

Preceding gene: 110678288

Following gene: 110678290

Centisome position: 22.06

GC content: 59.61

Gene sequence:

>765_bases
ATGATACCCCATCTCCCTGAGGCGTTTCTGACGCGCCCTCTTGCTCACCGTGCGCTACATGACATTGCGCAGGGCCGTCC
GGAGAATAGCCGGGCGGCAATAAAAGCCGCAATCGCAGCCGGTTATGGGATAGAGATCGACATCCAGTTGAGCGCGGACG
ATCAGGCCATGGTGTTCCACGATTACAATCTGGCGCGTTTGACCACCGCCGAAGGACGTGTGCGCGATACCTCTGCGGCG
GATTTGCAAAAGACACAGTTGCGCGCGGGCGCAGAAGGCATTCCCGGCTTGCCCGAAATCCTTGATCTGGTTGCGGGGCA
GGTGCCCCTGCTGATTGAGATCAAGGATCAGGATGGGGCAATGGGGCTGGAAATCGGCCCGCTGGAAGCCAGTGTGGCGC
GGGCTTTGCAAGGCTATGTGGGGCCTGTCGCGCTGATGTCTTTCAACCCTCATTCGGTGCTGCGGCTGGCCGAACTTGTG
CCGGATGTTCCCCGGGGGCTGGTGACATGCGCCTATGAACCCTCTGTTCATCTGGGTGCGTCGGTCTGTGATGTTTTGCG
TGGTATTCCGGATTACGACCGGGCGGCCTGTTCCTTTATCAGCCACCAGAAAGAGGACCTCAGGCGCGCGCGGGTGGCCG
ACCTGAAAGCGGATGGCGCACGTATCCTGTGCTGGACAGTGCGCTCACCTCAAGAAGAAGCACACGCGCGCCAGATTGCG
GACAATATCACCTTCGAGAAATATCTCGCGCCAATTGCCGCTTGA

Upstream 100 bases:

>100_bases
AAGCGCTGGGGGATGCGGGGCGTCATTCGCGTTCAGCGGTGTCGGCGGCGTCCCTGCCGTTTGGCGTTGCGGTGGAAATA
GAAGGTATTTTCGAAGTTCA

Downstream 100 bases:

>100_bases
TCCCATGGGCTTGTGCCACACATAAGCCTTGTGAGATTGGGGCGCGATCATGCCAGAGCAAGCAGTTGAAATTCGGCTGA
TATCTTCCCTGCGGGAGATT

Product: putative glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIPHLPEAFLTRPLAHRALHDIAQGRPENSRAAIKAAIAAGYGIEIDIQLSADDQAMVFHDYNLARLTTAEGRVRDTSAA
DLQKTQLRAGAEGIPGLPEILDLVAGQVPLLIEIKDQDGAMGLEIGPLEASVARALQGYVGPVALMSFNPHSVLRLAELV
PDVPRGLVTCAYEPSVHLGASVCDVLRGIPDYDRAACSFISHQKEDLRRARVADLKADGARILCWTVRSPQEEAHARQIA
DNITFEKYLAPIAA

Sequences:

>Translated_254_residues
MIPHLPEAFLTRPLAHRALHDIAQGRPENSRAAIKAAIAAGYGIEIDIQLSADDQAMVFHDYNLARLTTAEGRVRDTSAA
DLQKTQLRAGAEGIPGLPEILDLVAGQVPLLIEIKDQDGAMGLEIGPLEASVARALQGYVGPVALMSFNPHSVLRLAELV
PDVPRGLVTCAYEPSVHLGASVCDVLRGIPDYDRAACSFISHQKEDLRRARVADLKADGARILCWTVRSPQEEAHARQIA
DNITFEKYLAPIAA
>Mature_254_residues
MIPHLPEAFLTRPLAHRALHDIAQGRPENSRAAIKAAIAAGYGIEIDIQLSADDQAMVFHDYNLARLTTAEGRVRDTSAA
DLQKTQLRAGAEGIPGLPEILDLVAGQVPLLIEIKDQDGAMGLEIGPLEASVARALQGYVGPVALMSFNPHSVLRLAELV
PDVPRGLVTCAYEPSVHLGASVCDVLRGIPDYDRAACSFISHQKEDLRRARVADLKADGARILCWTVRSPQEEAHARQIA
DNITFEKYLAPIAA

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=234, Percent_Identity=30.3418803418803, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27419; Mature: 27419

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPHLPEAFLTRPLAHRALHDIAQGRPENSRAAIKAAIAAGYGIEIDIQLSADDQAMVFH
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEE
DYNLARLTTAEGRVRDTSAADLQKTQLRAGAEGIPGLPEILDLVAGQVPLLIEIKDQDGA
CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCC
MGLEIGPLEASVARALQGYVGPVALMSFNPHSVLRLAELVPDVPRGLVTCAYEPSVHLGA
CCEEECCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH
SVCDVLRGIPDYDRAACSFISHQKEDLRRARVADLKADGARILCWTVRSPQEEAHARQIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
DNITFEKYLAPIAA
HCCCHHHHHHHHCC
>Mature Secondary Structure
MIPHLPEAFLTRPLAHRALHDIAQGRPENSRAAIKAAIAAGYGIEIDIQLSADDQAMVFH
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEE
DYNLARLTTAEGRVRDTSAADLQKTQLRAGAEGIPGLPEILDLVAGQVPLLIEIKDQDGA
CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCC
MGLEIGPLEASVARALQGYVGPVALMSFNPHSVLRLAELVPDVPRGLVTCAYEPSVHLGA
CCEEECCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH
SVCDVLRGIPDYDRAACSFISHQKEDLRRARVADLKADGARILCWTVRSPQEEAHARQIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
DNITFEKYLAPIAA
HCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]