Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110678290

Identifier: 110678290

GI number: 110678290

Start: 912722

End: 913909

Strand: Direct

Name: 110678290

Synonym: RD1_0943

Alternate gene names: NA

Gene position: 912722-913909 (Clockwise)

Preceding gene: 110678289

Following gene: 110678291

Centisome position: 22.08

GC content: 57.66

Gene sequence:

>1188_bases
ATGCCAGAGCAAGCAGTTGAAATTCGGCTGATATCTTCCCTGCGGGAGATTGACCCGAAAGAGTGGGACGCCTGCGCCTG
CCCTGAAGAAACCGGTGGCGCGCGCGCGATTGATCCTTTCACGACCCACCGGTTTCTCGATGCGTTGGAACAAAGCCGGT
CCGTTGGTGCGGGCACGGGCTGGCAGCCGCAGTATCTGACCGCGTGGATATCGGGCAAGCTGATTGCCGTGGCCCCGATG
TATGCCAAATCGCACAGTCAGGGCGAATATATTTTCGATCACAACTGGGCCCATGCCTACGAGCGCGCAGGGGGCAGATA
TTATCCCAAACTTCAGATCGCGGTGCCGCATACGCCTGCGACGGGGCGACGTTTCCTGATTCGCCCCGGATTTGAGGAGA
CCGGTTTCGCAGCACTCACCCAAGGGGCGGTCGAGTTGGCCACAAACAACCGTGTGTCGTCGCTCCACGTGACGTTTTGC
ACGCAGCAAGAGGCAGAACGCGGCGCAGAATTGGGGCTGATGCGGCGCAAAACGCAGCAATTTCACTGGCTCAACGACAA
ATACGCGAATTTTGACGCGTTTCTGGACTCGCTCAGCTCGCGCAAACGCAAGAACATCCGCAAGGAACGCGCAAAGGCGC
AGGGCTTTGGCGGCACAATCCAAATCTTCACAGGTGATGAATTGCAGCCAGAGCATTGGGATGCGTTCTGGGCGTTCTAT
CAGGATACCGGCGCGCGCAAATGGGGCACCCCCTATCTGACCCGCGCGTTTTTCGACGTGGCGCAGGAGACATTACGCAA
CGACATGGCGCTCGTTCTGGCAGAACGGAACGGGCGCTGGGTTGCCGGCGCGCTGAATTTCATTGGCGCCAAGACCCTGT
TTGGGCGCTATTGGGGCTGCACCGAACACCATCCGTTTTTGCATTTTGAACTGTGCTATTATCAGGCGATGGATCTTGCC
ATTTCGCTCGGTCTTGACCGTGTTGAGGCGGGTGCTCAGGGCGAGCATAAATTGGCCCGCGGTTACTTGCCGACGCCAAC
TTGGTCATTGCATTGGGTTGCCGATCCGGGTTTTAGAGACGCGATTGATCAATATCTGACGGCTGAACGCGAGGCCGTGG
ATCAGGAAATCAGCGTGCTGACCACCTATGGTCCCTTCAAGCGCGCCAAAGTTGAGGAACAGGAATGA

Upstream 100 bases:

>100_bases
ATTGCGGACAATATCACCTTCGAGAAATATCTCGCGCCAATTGCCGCTTGATCCCATGGGCTTGTGCCACACATAAGCCT
TGTGAGATTGGGGCGCGATC

Downstream 100 bases:

>100_bases
CAGAAAAGCTAAGCACCGAAACACGCGGCCCATTGCTGGAGCCGCTTTTCGCCTCAGGCTGGGAGATGGTCGAGGGGCGG
GACGCGATCAAAAAGACGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPM
YAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFC
TQQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY
QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLA
ISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE

Sequences:

>Translated_395_residues
MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPM
YAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFC
TQQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY
QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLA
ISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE
>Mature_394_residues
PEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPMY
AKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCT
QQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFYQ
DTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLAI
SLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE

Specific function: Unknown

COG id: COG3146

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44836; Mature: 44705

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTG
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
WQPQYLTAWISGKLIAVAPMYAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPA
CCCHHEEHHHCCCEEEEEEHHHCCCCCCCEEEECCHHHHHHHCCCEECCEEEEEECCCCC
TGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCTQQEAERGAELGLMRRKTQQ
CCCEEEEECCCCCCCHHHHHCCHHEEECCCCEEEEEEEEECHHHHHCCHHHHHHHHHHHH
FHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGC
HHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCC
TEHHPFLHFELCYYQAMDLAISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRD
CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCHHH
AIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE
HHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCC
>Mature Secondary Structure 
PEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
WQPQYLTAWISGKLIAVAPMYAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPA
CCCHHEEHHHCCCEEEEEEHHHCCCCCCCEEEECCHHHHHHHCCCEECCEEEEEECCCCC
TGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCTQQEAERGAELGLMRRKTQQ
CCCEEEEECCCCCCCHHHHHCCHHEEECCCCEEEEEEEEECHHHHHCCHHHHHHHHHHHH
FHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGC
HHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCC
TEHHPFLHFELCYYQAMDLAISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRD
CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCHHH
AIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE
HHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA