| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is moxF [H]
Identifier: 110678237
GI number: 110678237
Start: 865703
End: 867505
Strand: Direct
Name: moxF [H]
Synonym: RD1_0890
Alternate gene names: 110678237
Gene position: 865703-867505 (Clockwise)
Preceding gene: 110678236
Following gene: 110678238
Centisome position: 20.95
GC content: 57.13
Gene sequence:
>1803_bases ATGAGAAAGCTATCGCTTTTGACTTCTGGGATCGCTCTTTGCGCGGCCAGTATGGCTTTTGCAAATGACGACCTGGTCAC GCAAATGAGTGATTCCAAGCAATGGGCCATTCAGACGGGTGACTACAAAAACCAACGCTACTCTGCACTTGACCAGATCA ACGAAGAAAACGTCGGCGATCTGCAGGTTGCATGGACATTCTCGACGGGTGTTCTGCGGGGCCATGAGGGTTCGCCTCTG GTGATTGGTGATGTGATGTACGTGCACACGCCATTTCCAAACATCGTCTACGCGCTGGACCTTGCCAACGAGGGCAAGAT CATCTGGAAGTATGAGCCAAAGCAGGACCCGGACGTCATTCCGGTGATGTGCTGTGACACCGTTTATCGCGGTGTGGCTT ATGCCGATAACAAGATCTTCCTGCATCAGGCGGATACAACCGTTGTCGCGCTCAACGCTGAAACCGGCGCTGTTGAATGG TCCGTCGTAAATGGTGATCCTGCCATCGGCGAGACGAACACCGCAACCGTTCTGCCCGTCAAGGACAAGGTCATCGTCGG GATTTCCGGTGGTGAATTCGGTGTGCGCGGCCATGTGACAGCGTACAACATGGAAACGGGTGAAAAGGAATGGCGTGCCT ATTCCGTCGGTCCGGATGATGAGATGCTGGTTGATCCGGTGAACACGACGCATCTGGGCAAACCCGTTGGTGAAAACTCC AGCCTCAACAGCTGGGAAGGCGACCAGTGGATGATCGGTGGCGGCACCACATGGGGCTGGTATGCGGCTGATCTTGAAGA GAACCTGATGTACTACGGTACAGGGAACCCTTCGACATGGAACCCGGCCCAGCGTCCGGGCGACAACCGCTGGACCATGA CGGTCATGGCGCGTGACATCGACACCGGTGTTGCAAGGTGGCTCTACCAGATGACCCCGCACGACGAGTGGGATTATGAC GGCGTCAACGAGAACATTCTCACCGAGCAGGAAATCGACGGTGTAGAGCGCAAGCTGTTGACCCGGTTCGACCGCAACGG TCTGGCCTATACGATGGACCGTGTGACGGGCGAATTGCTCGTGGCTGAAAAGTTCGACCCGGTCGTGAACTGGACCTCCG GTGTTGACATGGATCCCGAAAGCGAAACCTACGGTCGTCCGCAGGTTGTGGCTCAGTACTCAACGGCGCAAAACGGTGAA GACGTGAACTCCACCGGTATCTGCCCTGCGGCTCTGGGCACCAAAGACCAGCAGCCAGCGGCCTATTCGCCGCGCACCGA AGTGTTCTACGTGCCGACAAACCACGTCTGCATGGACTATGAGCCCTTCCGCGTGTCCTACACCGCTGGTCAGCCCTACG TCGGTGCAACCCTGTCGATGTACCCGGCACCTGACAGCCATGGCGGCATGGGTAACTTCATCGCCTGGGACAACATCAAC GGTGAGATCCTGTGGTCCATCCCCGAGAAGTTCTCGGTCTGGTCCGGTGCTCTCGCAACTGCCGGTGACGTTGTGTTCTA CGGAACGCTTGAAGGTCACCTGAAAGCGGTGAGCGCCAATACTGGTGAAGAGTTGTACCGCTTCAAGACACCATCGGGCA TCATCGGTAACGTCATGACCTATGAGCATGATGGCCGTCAGTACGTCGGTATCCTCTCCGGTGTCGGTGGTTGGGCCGGT ATTGGTCTGGCGGCTGGTCTGACAAACCCGAACGACGGTCTGGGTGCTGTGGGCGGTTATGCAGCCCTGAGCGACTATAC CGCGCTGGGTGGACAGCTGACTGTCTTCGCTCTGCCGAACTAA
Upstream 100 bases:
>100_bases ACAGACCTACTCCACAGGAATAACCCGGTACCCTGTCCGTTCCTTGGTCAGGTGTATCATTCCAGCGGCAATCCTGCCGC ATTCTAGGGAGGTAATTTAG
Downstream 100 bases:
>100_bases GCGGTGGCTTGATCCAGCATGAACGAATGGCGCGGCCGAACGGTCGCGCCACTTCAAAAACAAACGGGCGACAGTCAGTG GCTGGCCCAGTGATCACGGG
Product: methanol dehydrogenase, large subunit
Products: aldehyde; reduced acceptor
Alternate protein names: NA
Number of amino acids: Translated: 600; Mature: 600
Protein sequence:
>600_residues MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN
Sequences:
>Translated_600_residues MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN >Mature_600_residues MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGDLQVAWTFSTGVLRGHEGSPL VIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVIPVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEW SVVNGDPAIGETNTATVLPVKDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDIDTGVARWLYQMTPHDEWDYD GVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELLVAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGE DVNSTGICPAALGTKDQQPAAYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMTYEHDGRQYVGILSGVGGWAG IGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN
Specific function: Gdh Is Probably Involved In Energy Conservation Rather Than In Sugar Metabolism. [C]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=399, Percent_Identity=26.0651629072682, Blast_Score=105, Evalue=8e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: 1.1.99.8
Molecular weight: Translated: 65342; Mature: 65342
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGD CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC LQVAWTFSTGVLRGHEGSPLVIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVI EEEEEEEECCEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEE PVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEWSVVNGDPAIGETNTATVLPV EEEEHHHHHCCEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEE KDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS CCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDI CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECH DTGVARWLYQMTPHDEWDYDGVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE VAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGEDVNSTGICPAALGTKDQQPA EEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCC AYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN CCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEECCC GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMT CEEEEECCCCCCHHCCCHHCCCCEEEEEEECCEEEEEECCCCCHHEEEECCCCCCCCEEE YEHDGRQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN EECCCCEEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure MRKLSLLTSGIALCAASMAFANDDLVTQMSDSKQWAIQTGDYKNQRYSALDQINEENVGD CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC LQVAWTFSTGVLRGHEGSPLVIGDVMYVHTPFPNIVYALDLANEGKIIWKYEPKQDPDVI EEEEEEEECCEEECCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCCEE PVMCCDTVYRGVAYADNKIFLHQADTTVVALNAETGAVEWSVVNGDPAIGETNTATVLPV EEEEHHHHHCCEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEE KDKVIVGISGGEFGVRGHVTAYNMETGEKEWRAYSVGPDDEMLVDPVNTTHLGKPVGENS CCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCC SLNSWEGDQWMIGGGTTWGWYAADLEENLMYYGTGNPSTWNPAQRPGDNRWTMTVMARDI CCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECH DTGVARWLYQMTPHDEWDYDGVNENILTEQEIDGVERKLLTRFDRNGLAYTMDRVTGELL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE VAEKFDPVVNWTSGVDMDPESETYGRPQVVAQYSTAQNGEDVNSTGICPAALGTKDQQPA EEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCC AYSPRTEVFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDNIN CCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEECCC GEILWSIPEKFSVWSGALATAGDVVFYGTLEGHLKAVSANTGEELYRFKTPSGIIGNVMT CEEEEECCCCCCHHCCCHHCCCCEEEEEEECCEEEEEECCCCCHHEEEECCCCCCCCEEE YEHDGRQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFALPN EECCCCEEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: primary alcohol; acceptor
Specific reaction: a primary alcohol + acceptor = an aldehyde + reduced acceptor
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1657873 [H]