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The map label for this gene is 110678236

Identifier: 110678236

GI number: 110678236

Start: 865176

End: 865577

Strand: Direct

Name: 110678236

Synonym: RD1_0889

Alternate gene names: NA

Gene position: 865176-865577 (Clockwise)

Preceding gene: 110678235

Following gene: 110678237

Centisome position: 20.93

GC content: 56.47

Gene sequence:

>402_bases
ATGCTAAAGAAATTTCTATCCGTCGCCTGCCTCATGGCACTGCCTGCCGCTGGCTTTGCGGATGGGCATATCACGGGCGA
TGCAGCGGCTGGTGAAAAGGTATTTCGCAAGTGCAAAGCCTGTCATGCCGTTGGTGAGGGCGCCGAGAACAAGATTGGCC
CCGCCCTGAATGGCATCGTTGACGCCGCTGTCGCTGGCAATCCCGATTTCAAATATTCGGATGTGCTGATGGCGATGGCA
GCCGAGGGCAAGACATGGACACCTGAGGAGCTGTCCGGCTTCCTTGAAAAACCACGCAACTACGCGAAGGGCACCAAGAT
GGCCTTTGCCGGATTGCGCAAGGAAGAAGACCGCATGAACGTAATCGCATATCTTGCGTCTTTCCCGGCAGGGGGGTCGT
AA

Upstream 100 bases:

>100_bases
CGTATTTCTTCGTGAACAGTTTTGCGCGGGATCATGTATCATGGCACGCGGAGCGACTACACTGACTGTTCGACCAAGGT
GAAACCAAGGAAGGTACTAT

Downstream 100 bases:

>100_bases
GACAACGAATTTCCTGTGGCGTGGGACAGACCTACTCCACAGGAATAACCCGGTACCCTGTCCGTTCCTTGGTCAGGTGT
ATCATTCCAGCGGCAATCCT

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MLKKFLSVACLMALPAAGFADGHITGDAAAGEKVFRKCKACHAVGEGAENKIGPALNGIVDAAVAGNPDFKYSDVLMAMA
AEGKTWTPEELSGFLEKPRNYAKGTKMAFAGLRKEEDRMNVIAYLASFPAGGS

Sequences:

>Translated_133_residues
MLKKFLSVACLMALPAAGFADGHITGDAAAGEKVFRKCKACHAVGEGAENKIGPALNGIVDAAVAGNPDFKYSDVLMAMA
AEGKTWTPEELSGFLEKPRNYAKGTKMAFAGLRKEEDRMNVIAYLASFPAGGS
>Mature_133_residues
MLKKFLSVACLMALPAAGFADGHITGDAAAGEKVFRKCKACHAVGEGAENKIGPALNGIVDAAVAGNPDFKYSDVLMAMA
AEGKTWTPEELSGFLEKPRNYAKGTKMAFAGLRKEEDRMNVIAYLASFPAGGS

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=38.6138613861386, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=38.6138613861386, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17566554, Length=101, Percent_Identity=35.6435643564356, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6320796, Length=116, Percent_Identity=36.2068965517241, Blast_Score=80, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=37.6237623762376, Blast_Score=73, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=42.3076923076923, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=41.747572815534, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13943; Mature: 13943

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKFLSVACLMALPAAGFADGHITGDAAAGEKVFRKCKACHAVGEGAENKIGPALNGIV
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
DAAVAGNPDFKYSDVLMAMAAEGKTWTPEELSGFLEKPRNYAKGTKMAFAGLRKEEDRMN
HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VIAYLASFPAGGS
HHHHHHHCCCCCC
>Mature Secondary Structure
MLKKFLSVACLMALPAAGFADGHITGDAAAGEKVFRKCKACHAVGEGAENKIGPALNGIV
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
DAAVAGNPDFKYSDVLMAMAAEGKTWTPEELSGFLEKPRNYAKGTKMAFAGLRKEEDRMN
HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VIAYLASFPAGGS
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA