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The map label for this gene is cydB [H]

Identifier: 110678151

GI number: 110678151

Start: 766511

End: 767512

Strand: Direct

Name: cydB [H]

Synonym: RD1_0794

Alternate gene names: 110678151

Gene position: 766511-767512 (Clockwise)

Preceding gene: 110678150

Following gene: 110678155

Centisome position: 18.55

GC content: 55.39

Gene sequence:

>1002_bases
ATGGTTTTTGATCTTGCATTCATCTGGGCTGGGCTGATTGCCTTCGCCGTCTTGACCTATGTGGTCCTTGACGGTTTCGA
TCTTGGTATCGGTATCCTGTTCCCGTTCGGAAAATCTGAACGGGACAGAGATCTGATGATGAATTCTGTCGCCCCCGTTT
GGGACGGCAACGAAACTTGGCTGGTGCTGGGGGGCGGTGGCCTCTTTGCGGTCTTCCCTCTGGCCTACGCCATCGTCATG
CCTGCGCTTTACATGCCGATTACTTTGATGCTGCTGGCTTTGGTATTTCGAGGTGTGTCTTTTGAATACCGCTGGCGGAC
TGAAAGGAAGGGGCTGTGGGATGCGGCCTTCTTCGGTGGATCACTCGTCGCCGCATTTTGTCAAGGGATCGCCCTCGGTG
CATTGGTGCAGGGCATTGAGATTGAGGGCCGTAACTATTCAGGGGGATGGTTCGACTGGCTTACACCGTTTTCGGTGCTC
ACTGGTCTTGCGGTTGTTGTTGGTTACGCGCTGCTCGGTGCAACTTGGCTGGTGCTGAAAACCGAAGGCGATCTGCGGGT
TCAAATGCGCGGTTATGCCTGGTGGCTTGGAGCCGCAACGCTCGGGGTGATCGGTGTCGTCAGCATCCTCACGCCATTTC
AGGACCCAGTGTATTTCGAGCGCTGGTTCAATCTTCCTGGAAGCCTCTGGTCCATGATTGTGCCTGTGCTGATGGCTGCC
CTCTCGTGGTCATTCTTTACAGGCCTCAACGACCAAAATGATGTGCGCCCATTCCTGTCCGCGCTTGGCTTCTTTGTTGT
CAGCTTCATCGGAATTGGGATCAGCTTCTTTCCAATGATGGTGCCGCCATCTCTGACGATCTGGCAGGCCGCAGCCCCTG
ACAGCAGCCTTGCGTTTGCATTGGTCGGTGCTGTCATCTTGATCCCGATCATCCTCGCCTACACGGCTTACGCCTACTGG
GTGTTTCGGGGCAAAATGGACCCGTCAGAGGGGTATCACTGA

Upstream 100 bases:

>100_bases
AAAACTTGGCCTGCGCGATGGACCGATCCGCACTGCAGGGATCACCCCGGCCCCACAAGTCGACCCCGACTTTATCCCCG
GCGAATAAGGAGCATACGCA

Downstream 100 bases:

>100_bases
TGACACGTCCTCTGCTTCGCAAATGGGTCTGGTTTATTGGATTGTGGATCGCCAGCGTCGTGGCGCTGGCGACGGTGGCA
ATGCTTATTCGGACCGTCAT

Product: cytochrome oxidase, subunit II, putative

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MVFDLAFIWAGLIAFAVLTYVVLDGFDLGIGILFPFGKSERDRDLMMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAIVM
PALYMPITLMLLALVFRGVSFEYRWRTERKGLWDAAFFGGSLVAAFCQGIALGALVQGIEIEGRNYSGGWFDWLTPFSVL
TGLAVVVGYALLGATWLVLKTEGDLRVQMRGYAWWLGAATLGVIGVVSILTPFQDPVYFERWFNLPGSLWSMIVPVLMAA
LSWSFFTGLNDQNDVRPFLSALGFFVVSFIGIGISFFPMMVPPSLTIWQAAAPDSSLAFALVGAVILIPIILAYTAYAYW
VFRGKMDPSEGYH

Sequences:

>Translated_333_residues
MVFDLAFIWAGLIAFAVLTYVVLDGFDLGIGILFPFGKSERDRDLMMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAIVM
PALYMPITLMLLALVFRGVSFEYRWRTERKGLWDAAFFGGSLVAAFCQGIALGALVQGIEIEGRNYSGGWFDWLTPFSVL
TGLAVVVGYALLGATWLVLKTEGDLRVQMRGYAWWLGAATLGVIGVVSILTPFQDPVYFERWFNLPGSLWSMIVPVLMAA
LSWSFFTGLNDQNDVRPFLSALGFFVVSFIGIGISFFPMMVPPSLTIWQAAAPDSSLAFALVGAVILIPIILAYTAYAYW
VFRGKMDPSEGYH
>Mature_333_residues
MVFDLAFIWAGLIAFAVLTYVVLDGFDLGIGILFPFGKSERDRDLMMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAIVM
PALYMPITLMLLALVFRGVSFEYRWRTERKGLWDAAFFGGSLVAAFCQGIALGALVQGIEIEGRNYSGGWFDWLTPFSVL
TGLAVVVGYALLGATWLVLKTEGDLRVQMRGYAWWLGAATLGVIGVVSILTPFQDPVYFERWFNLPGSLWSMIVPVLMAA
LSWSFFTGLNDQNDVRPFLSALGFFVVSFIGIGISFFPMMVPPSLTIWQAAAPDSSLAFALVGAVILIPIILAYTAYAYW
VFRGKMDPSEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=33.2425068119891, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=31.767955801105, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36623; Mature: 36623

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFDLAFIWAGLIAFAVLTYVVLDGFDLGIGILFPFGKSERDRDLMMNSVAPVWDGNETW
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCEE
LVLGGGGLFAVFPLAYAIVMPALYMPITLMLLALVFRGVSFEYRWRTERKGLWDAAFFGG
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
SLVAAFCQGIALGALVQGIEIEGRNYSGGWFDWLTPFSVLTGLAVVVGYALLGATWLVLK
HHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
TEGDLRVQMRGYAWWLGAATLGVIGVVSILTPFQDPVYFERWFNLPGSLWSMIVPVLMAA
ECCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
LSWSFFTGLNDQNDVRPFLSALGFFVVSFIGIGISFFPMMVPPSLTIWQAAAPDSSLAFA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
LVGAVILIPIILAYTAYAYWVFRGKMDPSEGYH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVFDLAFIWAGLIAFAVLTYVVLDGFDLGIGILFPFGKSERDRDLMMNSVAPVWDGNETW
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCEE
LVLGGGGLFAVFPLAYAIVMPALYMPITLMLLALVFRGVSFEYRWRTERKGLWDAAFFGG
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
SLVAAFCQGIALGALVQGIEIEGRNYSGGWFDWLTPFSVLTGLAVVVGYALLGATWLVLK
HHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
TEGDLRVQMRGYAWWLGAATLGVIGVVSILTPFQDPVYFERWFNLPGSLWSMIVPVLMAA
ECCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
LSWSFFTGLNDQNDVRPFLSALGFFVVSFIGIGISFFPMMVPPSLTIWQAAAPDSSLAFA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
LVGAVILIPIILAYTAYAYWVFRGKMDPSEGYH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]