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The map label for this gene is cydA [H]

Identifier: 110678150

GI number: 110678150

Start: 765086

End: 766498

Strand: Direct

Name: cydA [H]

Synonym: RD1_0793

Alternate gene names: 110678150

Gene position: 765086-766498 (Clockwise)

Preceding gene: 110678149

Following gene: 110678151

Centisome position: 18.51

GC content: 57.68

Gene sequence:

>1413_bases
ATGCTTGACGTCTTTAGCGCAGAGATGCTCGCACGTATCCAATTCGCGTTTACGGTGTCGTTCCATATCATCTTCCCCGC
CTTTTCGATCGGTCTGGCCAGCTACCTCGCTGTGCTGAAAGCATTGTGGATGCGGACACGGGACGAGACGTATCTGACGC
TCTTCAACTACTGGAAAAAGATCTTCGCCGTGGCTTTTGGCATGGGCGTCGTGTCGGGCATCGTGATGTCGTATCAGTTT
GGCACCAACTGGTCGGTGTTCTCGGATTTGGCCGGACCCGTTGTTGGTCCACTGATGGCTTATGAAGTTCTGTCCGCCTT
CTTTCTTGAAGCAGGGTTCCTCGGGATCATGCTCTTTGGGCGCGAACGGGTGGGCGAGAAACTGCATATGTTTGCCACGG
CCATGGTGGCTTTTGGCACGCTGATGTCAGCGACTTGGATCTTGTCGGTGAACAGCTGGATGCAGACGCCTGCAGGATTT
TCGATCAACGAGGTCGGTCAATTCGTGCCGGAAGACTGGTGGCAGATCGTTTTCAACCCGTCTTTCCCCTATCGCCTGGC
CCACATGGTCCTTGCGGCCTTCCTGACCACTGCGCTTGTTGTCGGCGCTGTCGGAGCCGTGCATCTGCTCCGCGATAAGA
CCGATCAGCACGCGCGGCGCATGTTCTCCATGGCGATGTGGATGGCCTTCATTGTTACGCCGATCCAGATCTTTGCTGGC
CATGAGCACGGGCTCAATACGCTTGAGCTTCAACCGGTCAAGATCATGGCGATGGAGGGCCACTACGAAAGCCACCCCGA
AGGTTGGGCACCGCTCTACCTGTTTGGCATTCCAAATGATGCGGAACAACGCCTTGACTACACGCTTAGCATTCCCGGTC
TCGGCAACCTCATCTTTGAAAAACCGCTTGATAAGCCTGTGATGGGGCTCGACACGGTCCCCGACGAAGACCAGCCGCCC
GTGGGCATTGTATTCTGGTCTTTCCGTGTGATGGTCGGGCTTGGGTTCGTGATGCTGGGTCTTGGGGTTTGGTCGGCATG
GTCGCGCTGGCGTGGCACGCTGTTTGACGCACCCTGGTTACTTCGTGCCAGCATTCTCATGGGGCCAACCGGATTTGTGG
CCGTTCTTGCAGGGTGGATCACCACGGAGGTGGGGCGTCAGCCCTATACGGTCTACGGCTTCTTGCGGACCTCAGACAGC
CTCGCGCCCGTCGATGCGCCCGCAGTCGCTACATCGCTTGTGGCCTTTATCATCGTGTATTTTGCCGTCTTTGGCGCGGG
CACCGTCTACATCCTGCGGATGATGAACAAGCCGCCCGCGACGCCAAAACTTGGCCTGCGCGATGGACCGATCCGCACTG
CAGGGATCACCCCGGCCCCACAAGTCGACCCCGACTTTATCCCCGGCGAATAA

Upstream 100 bases:

>100_bases
CACCCAACACACGGATCATGTCGTTCTGAACAATATGAAAAACACGGGCTATGGCGGGGCACTGCCATAGTCCGTCACTT
TGCAGGATTGAGAGTTTACC

Downstream 100 bases:

>100_bases
GGAGCATACGCAATGGTTTTTGATCTTGCATTCATCTGGGCTGGGCTGATTGCCTTCGCCGTCTTGACCTATGTGGTCCT
TGACGGTTTCGATCTTGGTA

Product: cytochrome oxidase subunit II, putative

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MLDVFSAEMLARIQFAFTVSFHIIFPAFSIGLASYLAVLKALWMRTRDETYLTLFNYWKKIFAVAFGMGVVSGIVMSYQF
GTNWSVFSDLAGPVVGPLMAYEVLSAFFLEAGFLGIMLFGRERVGEKLHMFATAMVAFGTLMSATWILSVNSWMQTPAGF
SINEVGQFVPEDWWQIVFNPSFPYRLAHMVLAAFLTTALVVGAVGAVHLLRDKTDQHARRMFSMAMWMAFIVTPIQIFAG
HEHGLNTLELQPVKIMAMEGHYESHPEGWAPLYLFGIPNDAEQRLDYTLSIPGLGNLIFEKPLDKPVMGLDTVPDEDQPP
VGIVFWSFRVMVGLGFVMLGLGVWSAWSRWRGTLFDAPWLLRASILMGPTGFVAVLAGWITTEVGRQPYTVYGFLRTSDS
LAPVDAPAVATSLVAFIIVYFAVFGAGTVYILRMMNKPPATPKLGLRDGPIRTAGITPAPQVDPDFIPGE

Sequences:

>Translated_470_residues
MLDVFSAEMLARIQFAFTVSFHIIFPAFSIGLASYLAVLKALWMRTRDETYLTLFNYWKKIFAVAFGMGVVSGIVMSYQF
GTNWSVFSDLAGPVVGPLMAYEVLSAFFLEAGFLGIMLFGRERVGEKLHMFATAMVAFGTLMSATWILSVNSWMQTPAGF
SINEVGQFVPEDWWQIVFNPSFPYRLAHMVLAAFLTTALVVGAVGAVHLLRDKTDQHARRMFSMAMWMAFIVTPIQIFAG
HEHGLNTLELQPVKIMAMEGHYESHPEGWAPLYLFGIPNDAEQRLDYTLSIPGLGNLIFEKPLDKPVMGLDTVPDEDQPP
VGIVFWSFRVMVGLGFVMLGLGVWSAWSRWRGTLFDAPWLLRASILMGPTGFVAVLAGWITTEVGRQPYTVYGFLRTSDS
LAPVDAPAVATSLVAFIIVYFAVFGAGTVYILRMMNKPPATPKLGLRDGPIRTAGITPAPQVDPDFIPGE
>Mature_470_residues
MLDVFSAEMLARIQFAFTVSFHIIFPAFSIGLASYLAVLKALWMRTRDETYLTLFNYWKKIFAVAFGMGVVSGIVMSYQF
GTNWSVFSDLAGPVVGPLMAYEVLSAFFLEAGFLGIMLFGRERVGEKLHMFATAMVAFGTLMSATWILSVNSWMQTPAGF
SINEVGQFVPEDWWQIVFNPSFPYRLAHMVLAAFLTTALVVGAVGAVHLLRDKTDQHARRMFSMAMWMAFIVTPIQIFAG
HEHGLNTLELQPVKIMAMEGHYESHPEGWAPLYLFGIPNDAEQRLDYTLSIPGLGNLIFEKPLDKPVMGLDTVPDEDQPP
VGIVFWSFRVMVGLGFVMLGLGVWSAWSRWRGTLFDAPWLLRASILMGPTGFVAVLAGWITTEVGRQPYTVYGFLRTSDS
LAPVDAPAVATSLVAFIIVYFAVFGAGTVYILRMMNKPPATPKLGLRDGPIRTAGITPAPQVDPDFIPGE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=491, Percent_Identity=29.7352342158859, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI87081779, Length=330, Percent_Identity=32.7272727272727, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52047; Mature: 52047

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDVFSAEMLARIQFAFTVSFHIIFPAFSIGLASYLAVLKALWMRTRDETYLTLFNYWKK
CCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFAVAFGMGVVSGIVMSYQFGTNWSVFSDLAGPVVGPLMAYEVLSAFFLEAGFLGIMLFG
HHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RERVGEKLHMFATAMVAFGTLMSATWILSVNSWMQTPAGFSINEVGQFVPEDWWQIVFNP
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCCCCCHHHHHHHCCCCHHEEEECC
SFPYRLAHMVLAAFLTTALVVGAVGAVHLLRDKTDQHARRMFSMAMWMAFIVTPIQIFAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HEHGLNTLELQPVKIMAMEGHYESHPEGWAPLYLFGIPNDAEQRLDYTLSIPGLGNLIFE
CCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHCCEEEECCCCCCHHHH
KPLDKPVMGLDTVPDEDQPPVGIVFWSFRVMVGLGFVMLGLGVWSAWSRWRGTLFDAPWL
CCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LRASILMGPTGFVAVLAGWITTEVGRQPYTVYGFLRTSDSLAPVDAPAVATSLVAFIIVY
HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
FAVFGAGTVYILRMMNKPPATPKLGLRDGPIRTAGITPAPQVDPDFIPGE
HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]