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The map label for this gene is yhcM [H]

Identifier: 110677729

GI number: 110677729

Start: 313515

End: 314642

Strand: Direct

Name: yhcM [H]

Synonym: RD1_0326

Alternate gene names: 110677729

Gene position: 313515-314642 (Clockwise)

Preceding gene: 110677727

Following gene: 110677735

Centisome position: 7.59

GC content: 59.13

Gene sequence:

>1128_bases
ATGCCCGCCGCACAATCCTTGATATGTGCCGCCTCTTTTCTCGCGCAGCCACAGTCGCTATTGGGGATTATGACCAGCCT
GTCGCAACACTACATGAGCCTCACGCAGGACGGCACGCTCATCGCCGATCCGGCGCAGATTGCGGCTTTGCCCGAGTTCG
AGCGCGTGCATGACGCCCTGTTGCAGCCCGTCAAAAAAGGGCTGTTCCGCAAGGTACCGGAACCGCCAAAGGGTGTCTAT
TTCTGGGGGGGCGTGGGACGCGGAAAATCCATGTTGATGGATCTGTTCGTGGAGCACCTTGACGGCATTCCAGCGCGCCG
CGTGCATTTTCATGCCTTCATGCAGGAGATACATGCCGCCATGCATGAGGTGCGCAAATCCGGCGTCGAAGACGCGATCA
GCCCAGTTGCCGCCGATGTCGCCGCCTCTGTGCGATTGCTCGCCTTTGATGAAATGCAGATCAGCGATATTACCGATGCG
ATGATCGTCGGACGTCTGTTTGAGGCGCTGTTCAACGCGGGCGTTGTGGTTATCACCACATCCAACCGGCACCCGGATGA
GCTTTATAAGAACGGGTTGAACCGCGATCTTTTCCTGCCGTTCATCGCCCTGATCAAAGAGCGCATGGTCATTCATGAAC
TGGTCAGCCCGACCGATTACCGACAGGACCGGCTCGGGGGGCAACAGGTCTATTTCACCCCGGTCAATTCTGACGCACGC
AAGGCCATGGATGCGGTTTGGGACGATCTGGCCGGGGGGGCGGGCACGCCGCTTGTCCTCAAGGTCAAAGGGCGGGATGT
CGAAATTCCAGCCTTCCGCAACAGCGTAGCGCGCGCCGGGTTTCACGACCTGTGCGGCAAGCCATTGGGGCCTGCCGATT
ACCTGACGCTGGCCGAAGCTGTCAAAGTGCTGATGATCGACGGCATCCCCACTTTGTCCCGTTCGAACTTCAATGAGGCG
AAGCGGTTCGTGACGCTGATTGATGCGCTTTACGAGGCCAAGGTGCGCCTGATCTGCTCGGCAGCGGCGAAACCGGAAAT
GCTATATGTCGAGGGCGAGGGCACGTTTGAGTTCGAACGCACGGCCTCAAGACTGCGCGAGATGCAGGGGAGCGACTGGG
GGCAATAG

Upstream 100 bases:

>100_bases
CAAAACCGGCGTGAAAAGTGGGGCGGATTTGGGCAAAATGTGATCCTTGATGTGTGGGCACACTACGATCTCGGATCGAA
ACGTCAATTCAGGAGTTTTT

Downstream 100 bases:

>100_bases
CGCCCCTAACCGTTCTCGCGCAAGATCGCCCCGGCAAGATAGAGCGAGCCGCAAATCAACACCCGCGCCTGTGGCGTGGT
TGCGACGATTTTTGCCAGCG

Product: ATPase, AFG1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPAAQSLICAASFLAQPQSLLGIMTSLSQHYMSLTQDGTLIADPAQIAALPEFERVHDALLQPVKKGLFRKVPEPPKGVY
FWGGVGRGKSMLMDLFVEHLDGIPARRVHFHAFMQEIHAAMHEVRKSGVEDAISPVAADVAASVRLLAFDEMQISDITDA
MIVGRLFEALFNAGVVVITTSNRHPDELYKNGLNRDLFLPFIALIKERMVIHELVSPTDYRQDRLGGQQVYFTPVNSDAR
KAMDAVWDDLAGGAGTPLVLKVKGRDVEIPAFRNSVARAGFHDLCGKPLGPADYLTLAEAVKVLMIDGIPTLSRSNFNEA
KRFVTLIDALYEAKVRLICSAAAKPEMLYVEGEGTFEFERTASRLREMQGSDWGQ

Sequences:

>Translated_375_residues
MPAAQSLICAASFLAQPQSLLGIMTSLSQHYMSLTQDGTLIADPAQIAALPEFERVHDALLQPVKKGLFRKVPEPPKGVY
FWGGVGRGKSMLMDLFVEHLDGIPARRVHFHAFMQEIHAAMHEVRKSGVEDAISPVAADVAASVRLLAFDEMQISDITDA
MIVGRLFEALFNAGVVVITTSNRHPDELYKNGLNRDLFLPFIALIKERMVIHELVSPTDYRQDRLGGQQVYFTPVNSDAR
KAMDAVWDDLAGGAGTPLVLKVKGRDVEIPAFRNSVARAGFHDLCGKPLGPADYLTLAEAVKVLMIDGIPTLSRSNFNEA
KRFVTLIDALYEAKVRLICSAAAKPEMLYVEGEGTFEFERTASRLREMQGSDWGQ
>Mature_374_residues
PAAQSLICAASFLAQPQSLLGIMTSLSQHYMSLTQDGTLIADPAQIAALPEFERVHDALLQPVKKGLFRKVPEPPKGVYF
WGGVGRGKSMLMDLFVEHLDGIPARRVHFHAFMQEIHAAMHEVRKSGVEDAISPVAADVAASVRLLAFDEMQISDITDAM
IVGRLFEALFNAGVVVITTSNRHPDELYKNGLNRDLFLPFIALIKERMVIHELVSPTDYRQDRLGGQQVYFTPVNSDARK
AMDAVWDDLAGGAGTPLVLKVKGRDVEIPAFRNSVARAGFHDLCGKPLGPADYLTLAEAVKVLMIDGIPTLSRSNFNEAK
RFVTLIDALYEAKVRLICSAAAKPEMLYVEGEGTFEFERTASRLREMQGSDWGQ

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=395, Percent_Identity=35.6962025316456, Blast_Score=248, Evalue=9e-66,
Organism=Escherichia coli, GI1789627, Length=364, Percent_Identity=34.0659340659341, Blast_Score=216, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17505769, Length=417, Percent_Identity=33.0935251798561, Blast_Score=219, Evalue=1e-57,
Organism=Saccharomyces cerevisiae, GI6320783, Length=318, Percent_Identity=36.7924528301887, Blast_Score=194, Evalue=2e-50,
Organism=Drosophila melanogaster, GI20129913, Length=348, Percent_Identity=35.0574712643678, Blast_Score=202, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41311; Mature: 41180

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAQSLICAASFLAQPQSLLGIMTSLSQHYMSLTQDGTLIADPAQIAALPEFERVHDAL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCHHHHHHHH
LQPVKKGLFRKVPEPPKGVYFWGGVGRGKSMLMDLFVEHLDGIPARRVHFHAFMQEIHAA
HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
MHEVRKSGVEDAISPVAADVAASVRLLAFDEMQISDITDAMIVGRLFEALFNAGVVVITT
HHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNRHPDELYKNGLNRDLFLPFIALIKERMVIHELVSPTDYRQDRLGGQQVYFTPVNSDAR
CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCHHH
KAMDAVWDDLAGGAGTPLVLKVKGRDVEIPAFRNSVARAGFHDLCGKPLGPADYLTLAEA
HHHHHHHHHHCCCCCCCEEEEECCCCEECHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHH
VKVLMIDGIPTLSRSNFNEAKRFVTLIDALYEAKVRLICSAAAKPEMLYVEGEGTFEFER
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
TASRLREMQGSDWGQ
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
PAAQSLICAASFLAQPQSLLGIMTSLSQHYMSLTQDGTLIADPAQIAALPEFERVHDAL
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCCCCHHHHHHHH
LQPVKKGLFRKVPEPPKGVYFWGGVGRGKSMLMDLFVEHLDGIPARRVHFHAFMQEIHAA
HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
MHEVRKSGVEDAISPVAADVAASVRLLAFDEMQISDITDAMIVGRLFEALFNAGVVVITT
HHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNRHPDELYKNGLNRDLFLPFIALIKERMVIHELVSPTDYRQDRLGGQQVYFTPVNSDAR
CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCHHH
KAMDAVWDDLAGGAGTPLVLKVKGRDVEIPAFRNSVARAGFHDLCGKPLGPADYLTLAEA
HHHHHHHHHHCCCCCCCEEEEECCCCEECHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHH
VKVLMIDGIPTLSRSNFNEAKRFVTLIDALYEAKVRLICSAAAKPEMLYVEGEGTFEFER
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
TASRLREMQGSDWGQ
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]