Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110677727

Identifier: 110677727

GI number: 110677727

Start: 311289

End: 312212

Strand: Direct

Name: 110677727

Synonym: RD1_0324

Alternate gene names: NA

Gene position: 311289-312212 (Clockwise)

Preceding gene: 110677726

Following gene: 110677729

Centisome position: 7.53

GC content: 63.2

Gene sequence:

>924_bases
ATGATCTGGGCGCTGCTGCTACTGGCGGGCATTGCGGCAGCACCCTTTGTGATCGAGGCCCTGCGCCGCCCCATGAACGC
CGCCGCGCGCAAATCGGCCCCCGGCGCGTTTGTTGATCTGTCGCAAGGGGTCACGCATTATCAATGGTCCGGCCCGGCAG
AGGGCCCTGTCATCGTCTGCATCCACGGGCTGACAACGCCGAGCTTTGTCTGGCAGGCTCTGCGCCCTGCGCTTGAGCGG
CGGGGGTTTCGTATCCTGTCCTATGACCTATACGGGCGCGGCTACTCCGACCGGCCCAAAGGCGTGCAGAACCCGGCATT
TTTCCTGCAACAGCTGAACGACCTGCTGGCCAGCCAAGACGTGCGAACGGATGTAACCGTGGTCGGCTATTCGATGGGCG
GGACGATTGCGACCCTTTTTGCGGCGGATCGACCGCAGGATATCCGACAGATGGTCCTGTTGGCCCCTGCCGGGATGCGC
CCGGTCGGATCGGGCCTGTTCAAAGCGGCGGTGCAAAACGCCGTTCTGGGACGCTGGGTCATGCTGGCCCTTTACCCGTC
GATCCTGCGCAAGGGCCTGCGCGCAGAGGCGCATGTGCCATCCAGCGTACCGGGGATCAACGCGCTGCAGCACGCCGAAT
TGACGTGGCGCGGCTTTGTCCCGGCGGTCCACTCCAGCCTGCTTGGTATGCTGAGCGATGGCCTTGCGGCGGAACATGCC
TCACTGGCGCAGCGGAAGGTTCCGGTCATGGCGATCTGGGGTGCAGCGGATGATGTGATCCCCTTGGCCGCCAAGGATCA
GCTTGCTGAATGGAACCCAAACGCGCAACAACAGGTGATCCCGGACGCGGGCCATGGGCTGACCTATACCCATTGCGATG
AAATTGACGCCCTGCTTGCGCCTTTTCTTGCAAAGGATGCCTAA

Upstream 100 bases:

>100_bases
AAGGCGACGATGAAATCACCCTGTTCAAGAATGGCGGTGGCGCGCATCTGGACCTCATGACCAGCCGCTTTATTCTGGAG
CGCTGGCAGGCGCAGTCCGC

Downstream 100 bases:

>100_bases
ACGGTCTGCAACCCTTCCAGCCGCCGTTCGCGGATCGGCAGATGGATGATTGCGCTGAAGGCCCCGACGGCCAGACCGAT
CCACCACACCAGCGTATAAT

Product: alpha/beta hydrolase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER
RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR
PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA
SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA

Sequences:

>Translated_307_residues
MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER
RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR
PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA
SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA
>Mature_307_residues
MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER
RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR
PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA
SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 33011; Mature: 33011

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEE
IHGLTTPSFVWQALRPALERRGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQD
EECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
VRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMRPVGSGLFKAAVQNAVLGRWV
CCCCEEEEEEECCCCEEEEHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLA
HHHHHCCCEEEEECCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
PFLAKDA
HHHHCCC
>Mature Secondary Structure
MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEE
IHGLTTPSFVWQALRPALERRGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQD
EECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
VRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMRPVGSGLFKAAVQNAVLGRWV
CCCCEEEEEEECCCCEEEEHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
MLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLA
HHHHHCCCEEEEECCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
PFLAKDA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]