| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is 110677727
Identifier: 110677727
GI number: 110677727
Start: 311289
End: 312212
Strand: Direct
Name: 110677727
Synonym: RD1_0324
Alternate gene names: NA
Gene position: 311289-312212 (Clockwise)
Preceding gene: 110677726
Following gene: 110677729
Centisome position: 7.53
GC content: 63.2
Gene sequence:
>924_bases ATGATCTGGGCGCTGCTGCTACTGGCGGGCATTGCGGCAGCACCCTTTGTGATCGAGGCCCTGCGCCGCCCCATGAACGC CGCCGCGCGCAAATCGGCCCCCGGCGCGTTTGTTGATCTGTCGCAAGGGGTCACGCATTATCAATGGTCCGGCCCGGCAG AGGGCCCTGTCATCGTCTGCATCCACGGGCTGACAACGCCGAGCTTTGTCTGGCAGGCTCTGCGCCCTGCGCTTGAGCGG CGGGGGTTTCGTATCCTGTCCTATGACCTATACGGGCGCGGCTACTCCGACCGGCCCAAAGGCGTGCAGAACCCGGCATT TTTCCTGCAACAGCTGAACGACCTGCTGGCCAGCCAAGACGTGCGAACGGATGTAACCGTGGTCGGCTATTCGATGGGCG GGACGATTGCGACCCTTTTTGCGGCGGATCGACCGCAGGATATCCGACAGATGGTCCTGTTGGCCCCTGCCGGGATGCGC CCGGTCGGATCGGGCCTGTTCAAAGCGGCGGTGCAAAACGCCGTTCTGGGACGCTGGGTCATGCTGGCCCTTTACCCGTC GATCCTGCGCAAGGGCCTGCGCGCAGAGGCGCATGTGCCATCCAGCGTACCGGGGATCAACGCGCTGCAGCACGCCGAAT TGACGTGGCGCGGCTTTGTCCCGGCGGTCCACTCCAGCCTGCTTGGTATGCTGAGCGATGGCCTTGCGGCGGAACATGCC TCACTGGCGCAGCGGAAGGTTCCGGTCATGGCGATCTGGGGTGCAGCGGATGATGTGATCCCCTTGGCCGCCAAGGATCA GCTTGCTGAATGGAACCCAAACGCGCAACAACAGGTGATCCCGGACGCGGGCCATGGGCTGACCTATACCCATTGCGATG AAATTGACGCCCTGCTTGCGCCTTTTCTTGCAAAGGATGCCTAA
Upstream 100 bases:
>100_bases AAGGCGACGATGAAATCACCCTGTTCAAGAATGGCGGTGGCGCGCATCTGGACCTCATGACCAGCCGCTTTATTCTGGAG CGCTGGCAGGCGCAGTCCGC
Downstream 100 bases:
>100_bases ACGGTCTGCAACCCTTCCAGCCGCCGTTCGCGGATCGGCAGATGGATGATTGCGCTGAAGGCCCCGACGGCCAGACCGAT CCACCACACCAGCGTATAAT
Product: alpha/beta hydrolase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA
Sequences:
>Translated_307_residues MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA >Mature_307_residues MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVCIHGLTTPSFVWQALRPALER RGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQDVRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMR PVGSGLFKAAVQNAVLGRWVMLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLAPFLAKDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 33011; Mature: 33011
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEE IHGLTTPSFVWQALRPALERRGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQD EECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC VRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMRPVGSGLFKAAVQNAVLGRWV CCCCEEEEEEECCCCEEEEHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH MLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLA HHHHHCCCEEEEECCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH PFLAKDA HHHHCCC >Mature Secondary Structure MIWALLLLAGIAAAPFVIEALRRPMNAAARKSAPGAFVDLSQGVTHYQWSGPAEGPVIVC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCCCCEEEE IHGLTTPSFVWQALRPALERRGFRILSYDLYGRGYSDRPKGVQNPAFFLQQLNDLLASQD EECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC VRTDVTVVGYSMGGTIATLFAADRPQDIRQMVLLAPAGMRPVGSGLFKAAVQNAVLGRWV CCCCEEEEEEECCCCEEEEHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH MLALYPSILRKGLRAEAHVPSSVPGINALQHAELTWRGFVPAVHSSLLGMLSDGLAAEHA HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHH SLAQRKVPVMAIWGAADDVIPLAAKDQLAEWNPNAQQQVIPDAGHGLTYTHCDEIDALLA HHHHHCCCEEEEECCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH PFLAKDA HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]