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The map label for this gene is ssaV [H]

Identifier: 108813563

GI number: 108813563

Start: 3878349

End: 3879434

Strand: Reverse

Name: ssaV [H]

Synonym: YPN_3403

Alternate gene names: 108813563

Gene position: 3879434-3878349 (Counterclockwise)

Preceding gene: 108813564

Following gene: 108813562

Centisome position: 85.55

GC content: 52.95

Gene sequence:

>1086_bases
ATGATCACCGCGCGGCAGGATATTTTTTTAGCGGTCATGTTGCTGGTGGCGGTCTTTATGATGATCCTGCCACTGCCTAC
GACGATGGTGGATTTACTGATCGCCATCAATCTTGCCTTCTCCGTCATTCTCTTAATGATCTCGATCTATCTGCGCGATC
CTTTGGAGTTCTCCGTCTTCCCGTCATTACTGTTGATCACCACCCTTTATCGATTGGCACTGACGATCAGCACCACGCGA
CTGGTGCTGTTGCAACATGATGCCGGTGAGATTGTCGAGGCATTCGGTCAGTTTGTCGTGGGCGGTAATCTGGCCGTCGG
GATGATCATTTTTACCATTATCACGGTGGTCCAATTTATCGTGATTACCAAAGGTTCAGAGCGGGTTGCTGAGGTCAGTG
CGCGCTTCTCACTTGATGGTATGCCGGGTAAGCAGATGAGCATCGACGGCGACATGCGTGCGGGTGCGATCGATTCGGTC
GAAGCTAAACGGCTACGGGAGCGGGTACAAAAAGAGAGCCGCTTATTTGGTGCTATGGACGGTGCCATGAAGTTTGTTAA
AGGGGATGCCATCGCTGGGATCATTGTCATTCTGATCAATATCATTGGCGGTATCACTATTGGTGTGATGCAACACAAGA
TGTCCGCGGAAGAGGCGATGAATACCTACGCGGTATTATCGATAGGCGATGGATTGTGCGCCCAAATCCCTTCATTACTG
ATCTCGATTACCGCCGGGATTATTGTTACCCGGGTTCCTGGCAGCAACAAACAGAGTCTGGCGAATGAGTTGGCGGTGCA
GGTGGGGCGTCAACCGGATGCGCTGTGGTTAGCTGCCGCTATTCTGACGGTGTTCGCCCTGTTACCCGGCTTCCCGTTCC
TGATCTTTATCACTTTGGCGGCCGCGGTTGCGGCTCCGGCTTTTTTACTTTATCGGAAGAACCGGCGGATATCGCAGGAT
GGTCGCGCAAATGGAGGCAGTGAAGAGGGGGGGGGCCACGGGGCAGCGTATGACGCCTGGTGCCGTACCGCTGATGCTGC
ACTGTGCATCAAATTTACATCACCCGCATTTAGGGCGCGATATTGA

Upstream 100 bases:

>100_bases
CACCATTTATCTCAACTGGTTCTGTGGCTACAGCAGTCGCCAGATCTTTTCGACGAAGAGAATGTTTATGAGTAAGTCAG
CACTGGTGCGGGGTTTGACG

Downstream 100 bases:

>100_bases
TGGCCTACGCTGGCGCTGGTTTGAGCATCTCGGTGTGCCATTGCCTGAGGTGGAGATCCGCTGTGATCCTACATTGGCAG
AAAATACCTTATCGGTGCAG

Product: type III secretion system component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLYRLALTISTTR
LVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSV
EAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL
ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLLYRKNRRISQD
GRANGGSEEGGGHGAAYDAWCRTADAALCIKFTSPAFRARY

Sequences:

>Translated_361_residues
MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLYRLALTISTTR
LVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSV
EAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL
ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLLYRKNRRISQD
GRANGGSEEGGGHGAAYDAWCRTADAALCIKFTSPAFRARY
>Mature_361_residues
MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLYRLALTISTTR
LVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSV
EAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL
ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLLYRKNRRISQD
GRANGGSEEGGGHGAAYDAWCRTADAALCIKFTSPAFRARY

Specific function: Required For Formation Of The Rod Structure Of The Flagellar Apparatus. Together With Flii And Flih, May Constitute The Export Apparatus Of Flagellin. [C]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=310, Percent_Identity=46.7741935483871, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 38796; Mature: 38796

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVF
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
PSLLLITTLYRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFI
HHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMD
HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHH
ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLA
HHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AAVAAPAFLLYRKNRRISQDGRANGGSEEGGGHGAAYDAWCRTADAALCIKFTSPAFRAR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHCC
Y
C
>Mature Secondary Structure
MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVF
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
PSLLLITTLYRLALTISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFI
HHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMD
HHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHH
ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLA
HHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AAVAAPAFLLYRKNRRISQDGRANGGSEEGGGHGAAYDAWCRTADAALCIKFTSPAFRAR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]