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The map label for this gene is ssaV [H]

Identifier: 108813562

GI number: 108813562

Start: 3877418

End: 3878464

Strand: Reverse

Name: ssaV [H]

Synonym: YPN_3402

Alternate gene names: 108813562

Gene position: 3878464-3877418 (Counterclockwise)

Preceding gene: 108813563

Following gene: 108813561

Centisome position: 85.53

GC content: 51.77

Gene sequence:

>1047_bases
ATGGAGGCAGTGAAGAGGGGGGGGGCCACGGGGCAGCGTATGACGCCTGGTGCCGTACCGCTGATGCTGCACTGTGCATC
AAATTTACATCACCCGCATTTAGGGCGCGATATTGATGGCCTACGCTGGCGCTGGTTTGAGCATCTCGGTGTGCCATTGC
CTGAGGTGGAGATCCGCTGTGATCCTACATTGGCAGAAAATACCTTATCGGTGCAGGTGTATCAGGAGCGGGTGCTGGAG
GTTGTGTTACCGCCCGACAGCTTGTTACTGACACGGCCTTGCTCATCGTTAGTAACGAACAATCAGGTATTGGGCGCGAA
GATGGGGTCATTTGATTGGCTGGATGCTAAACAGGCTATGCAAGCCAGAACCTTGGGTATCCCTTACGTGGAGGGGCATC
AGCGGATCATCACCTGTCTGACCAGGGTGTTTGAACGGTACACCGCCGAATTTATCGGCGTACAGGAGACTCGCTACCTG
ATGGATGCCATGGAAGGGCGCTATGGTGAGTTAGTGAAAGAGCTACAACGGCAGATACCCGTCGGTAAAGTGGCTGAAAT
ATTACAACGGCTGGTTGAGGAAAATATTTCCATTCGCGATTTACGGACTATTTTCGGCGCGTTGGTGGTTTGGGCACCGA
AAGAAAAAGATATCGTGATGCTCACCGAATATGTCCGTATCGCCTTGCGCCGTCATTTGTGCCGTCGCTTTAGTCACAAT
AAAACCTGGATATCAGTATTACGCCTCGGTGATGGGGTGGAGCATCTGATCCGCGACTCTATCCGCCAGACATCATCAGG
CACTTACTCCGCACTGGAGGAGAGGCAATCCCTCTTGATCCTCAACAAAATAAAAAACGCATTTGCTGAAAACCAGGATG
CGGTATTGCTTACCACCCTCGATGTTCGTCGCTTTGTCCGCAAAATTATTGAGCGGGATCTCTTCGTGCTACCGGTACTT
TCCTGGCAGGAACTGGGCGATGAAATGAATCTCAAGGTGGCGGGCACCATTGAACTGATTGGCGATGAACTTGATGAAAC
TGCCTGA

Upstream 100 bases:

>100_bases
TTCCCGTTCCTGATCTTTATCACTTTGGCGGCCGCGGTTGCGGCTCCGGCTTTTTTACTTTATCGGAAGAACCGGCGGAT
ATCGCAGGATGGTCGCGCAA

Downstream 100 bases:

>100_bases
TATCGCGCGGTTAACCCCCCGCCTGCAACAACAACTCACGCGACCGTCGGCACCACCGGAGGGCTTGCGTTACCGTGGGC
CGATTGTGGAGATTGGGCCG

Product: secretion system apparatus protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MEAVKRGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLE
VVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYL
MDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN
KTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVL
SWQELGDEMNLKVAGTIELIGDELDETA

Sequences:

>Translated_348_residues
MEAVKRGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLE
VVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYL
MDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN
KTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVL
SWQELGDEMNLKVAGTIELIGDELDETA
>Mature_348_residues
MEAVKRGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLE
VVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYL
MDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN
KTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVL
SWQELGDEMNLKVAGTIELIGDELDETA

Specific function: Not Known. [C]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=230, Percent_Identity=27.8260869565217, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 39685; Mature: 39685

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAVKRGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRC
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
DPTLAENTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAM
CCCHHCCHHHHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCEEECCCCCCCCCCHHHHH
QARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCC
VGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCEEHHHHHHHHHHHHHHHHHHCCC
KTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTL
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
DVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA
HHHHHHHHHHHCCEEEEECCCHHHCCCCCCEEEEEHHHHHCCHHCCCC
>Mature Secondary Structure
MEAVKRGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRC
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
DPTLAENTLSVQVYQERVLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAM
CCCHHCCHHHHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCEEECCCCCCCCCCHHHHH
QARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCC
VGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCEEHHHHHHHHHHHHHHHHHHCCC
KTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTL
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
DVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIELIGDELDETA
HHHHHHHHHHHCCEEEEECCCHHHCCCCCCEEEEEHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]