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The map label for this gene is hofB [C]

Identifier: 108801768

GI number: 108801768

Start: 5088722

End: 5089888

Strand: Reverse

Name: hofB [C]

Synonym: Mmcs_4805

Alternate gene names: 108801768

Gene position: 5089888-5088722 (Counterclockwise)

Preceding gene: 108801769

Following gene: 108801767

Centisome position: 89.21

GC content: 73.52

Gene sequence:

>1167_bases
GTGACCTCATCGCTGATCGATCGGGTGCGGGAGCGGCTCGCCGCCGAGTCGTCCCCGCTGCATCCGGCGGTCGTCGCGGC
CGCGATCCGGGCGGAGTCGGGTGGCGTCCTCGGTGACACCGAGGTGCTGACCAATCTGCGGGCGCTGCAGACCGAACTGA
CCGGTGCGGGTCCGCTCGAACCGCTGCTGTGCGCCGACGGCACCACCGACGTGCTGGTCACCGCGCCCGACGCGGTGTGG
ATCGACGACGGAAAGGGCCTGCGCCGCACCACGGTCCGGTTCGCCGACGAAGGTGCTGTGCGCCGGCTCGCGCAGCGGCT
GGCGCTGGCCGCGGGGCGTCGCCTGGATGAGGCCCAGCCGTGGGTCGACGGTCAACTGCACGGGCTCGGCGCGGGCGGGT
TCACCGTGCGCCTGCACGCCGTGCTCCCACCGGTCGCGGCCGCGGGCACGTGTCTGTCCCTTCGGGTGTTGCGTCCGGCC
ACACAGGATCTGCCCGCGCTGGTCGCCGCGGGCACGATCGTCGAAGACGCGTCCGCGCTGCTGCGCGACGTGATCGACGC
CCGGCTGGCGTTCCTGGTCAGCGGCGGAACCGGAGCGGGAAAGACGACGCTGCTCGCCGCCGCGCTCGGCGCGGTCGCCG
GCGACGAACGGATCGTCTGTGTCGAGGACGCCGCCGAACTGGCGCCGCAGCATCCCCACGTGGTGAAACTTGTCGCCCGC
GGGGCGAACGTCGAGGGAGTCGGCGAGGTGACCGTGCGCGATCTCGTACGGCAGGCGCTGCGGATGCGGCCCGACCGGAT
CGTCGTCGGGGAGGTCCGGGGCGCGGAGGTCGTCGACCTGCTCGCCGCGCTCAACACTGGCCACGACGGCGGTGCGGGGA
CCGTACACGCCAACAACCCCGCCGAGGTGCCCGCACGGATGGAGGCCCTCGGCGCGGTCGGCGGGCTCAACCGAGGGGCG
TTGCACAGCCAGTTGGCCGCCGCGGTGCAGGTGCTCCTGCACGTGGCGCGAGACCGCACCGGCGCGCGCCGGCTCACGCA
GATCGCGGTGCTGCAACCGCACGACGACGGATGCGTCCGCGTGGTTCCGGCGTGGCAGATCGATCGTGGGTTCGACGCCG
GTGCCGCGGATCTGCGCCGCCTGGTGTCGTCGAGGAGGGCGCGATGA

Upstream 100 bases:

>100_bases
TCGAACGCGGTGGTCTGCGGATCGCCCGGCGCGCACCGCTGGCGGCCGCGGCACGCCGCGTGCTGGACGTGCTGCAGCGG
CATCCCGCGGAGGCGGTGGC

Downstream 100 bases:

>100_bases
GCGTCGCCGCCGTCGCGCTCGCGTTGGCGCTGCTGCTCAACCCCGTCGACGTGAGTCGGCGGTTGCACACCCCTGCGCCG
CGGCAGGCGCGCCGCGGACT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MTSSLIDRVRERLAAESSPLHPAVVAAAIRAESGGVLGDTEVLTNLRALQTELTGAGPLEPLLCADGTTDVLVTAPDAVW
IDDGKGLRRTTVRFADEGAVRRLAQRLALAAGRRLDEAQPWVDGQLHGLGAGGFTVRLHAVLPPVAAAGTCLSLRVLRPA
TQDLPALVAAGTIVEDASALLRDVIDARLAFLVSGGTGAGKTTLLAAALGAVAGDERIVCVEDAAELAPQHPHVVKLVAR
GANVEGVGEVTVRDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTVHANNPAEVPARMEALGAVGGLNRGA
LHSQLAAAVQVLLHVARDRTGARRLTQIAVLQPHDDGCVRVVPAWQIDRGFDAGAADLRRLVSSRRAR

Sequences:

>Translated_388_residues
MTSSLIDRVRERLAAESSPLHPAVVAAAIRAESGGVLGDTEVLTNLRALQTELTGAGPLEPLLCADGTTDVLVTAPDAVW
IDDGKGLRRTTVRFADEGAVRRLAQRLALAAGRRLDEAQPWVDGQLHGLGAGGFTVRLHAVLPPVAAAGTCLSLRVLRPA
TQDLPALVAAGTIVEDASALLRDVIDARLAFLVSGGTGAGKTTLLAAALGAVAGDERIVCVEDAAELAPQHPHVVKLVAR
GANVEGVGEVTVRDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTVHANNPAEVPARMEALGAVGGLNRGA
LHSQLAAAVQVLLHVARDRTGARRLTQIAVLQPHDDGCVRVVPAWQIDRGFDAGAADLRRLVSSRRAR
>Mature_387_residues
TSSLIDRVRERLAAESSPLHPAVVAAAIRAESGGVLGDTEVLTNLRALQTELTGAGPLEPLLCADGTTDVLVTAPDAVWI
DDGKGLRRTTVRFADEGAVRRLAQRLALAAGRRLDEAQPWVDGQLHGLGAGGFTVRLHAVLPPVAAAGTCLSLRVLRPAT
QDLPALVAAGTIVEDASALLRDVIDARLAFLVSGGTGAGKTTLLAAALGAVAGDERIVCVEDAAELAPQHPHVVKLVARG
ANVEGVGEVTVRDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTVHANNPAEVPARMEALGAVGGLNRGAL
HSQLAAAVQVLLHVARDRTGARRLTQIAVLQPHDDGCVRVVPAWQIDRGFDAGAADLRRLVSSRRAR

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 40330; Mature: 40199

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSLIDRVRERLAAESSPLHPAVVAAAIRAESGGVLGDTEVLTNLRALQTELTGAGPLE
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PLLCADGTTDVLVTAPDAVWIDDGKGLRRTTVRFADEGAVRRLAQRLALAAGRRLDEAQP
CEEECCCCCCEEEECCCEEEEECCCCCEEHHHEECCCHHHHHHHHHHHHHHCCCCCCCCC
WVDGQLHGLGAGGFTVRLHAVLPPVAAAGTCLSLRVLRPATQDLPALVAAGTIVEDASAL
CCCCEEEEECCCCEEEEEEECCCCHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHH
LRDVIDARLAFLVSGGTGAGKTTLLAAALGAVAGDERIVCVEDAAELAPQHPHVVKLVAR
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHC
GANVEGVGEVTVRDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTVHANNP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCC
AEVPARMEALGAVGGLNRGALHSQLAAAVQVLLHVARDRTGARRLTQIAVLQPHDDGCVR
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCCCCCEE
VVPAWQIDRGFDAGAADLRRLVSSRRAR
EEECEEECCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSSLIDRVRERLAAESSPLHPAVVAAAIRAESGGVLGDTEVLTNLRALQTELTGAGPLE
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PLLCADGTTDVLVTAPDAVWIDDGKGLRRTTVRFADEGAVRRLAQRLALAAGRRLDEAQP
CEEECCCCCCEEEECCCEEEEECCCCCEEHHHEECCCHHHHHHHHHHHHHHCCCCCCCCC
WVDGQLHGLGAGGFTVRLHAVLPPVAAAGTCLSLRVLRPATQDLPALVAAGTIVEDASAL
CCCCEEEEECCCCEEEEEEECCCCHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHH
LRDVIDARLAFLVSGGTGAGKTTLLAAALGAVAGDERIVCVEDAAELAPQHPHVVKLVAR
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCHHHHHHHC
GANVEGVGEVTVRDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTVHANNP
CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCC
AEVPARMEALGAVGGLNRGALHSQLAAAVQVLLHVARDRTGARRLTQIAVLQPHDDGCVR
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCCCCCEE
VVPAWQIDRGFDAGAADLRRLVSSRRAR
EEECEEECCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]