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The map label for this gene is fadE25 [H]

Identifier: 108801656

GI number: 108801656

Start: 4971941

End: 4973095

Strand: Reverse

Name: fadE25 [H]

Synonym: Mmcs_4693

Alternate gene names: 108801656

Gene position: 4973095-4971941 (Counterclockwise)

Preceding gene: 108801663

Following gene: 108801655

Centisome position: 87.16

GC content: 67.45

Gene sequence:

>1155_bases
GTGATAGAGGTCCAGGAGTTCCGGGCCGAGGTCCGGCAGTGGCTCGCCGACAACCTGGTCGGCGAATACGCCGCGCTCAA
GGGGCTGGGCGGACCCGGCCGTGAACACGAGGCGTTCGAAGAGCGGCTGGCGTGGAACCGTCATCTCGCCGCGGCCGGTC
TGACCTGTCTGGGGTGGCCGGTCGAGCACGGCGGGCGCGGTCTGTCGGTCGCGCACCGCGTCGCGTTCTACGAGGAGTAC
GCGATCGCCAACGCCCCGGCGAAGGTCAACCACTTCGGCGAGGAACTGCTCGGCCCCACGCTCATCGCCTACGGCACGCC
CGAACAGCAGCAGCGGTTCCTGCCGAAGATCGTCGAAGTGACCGAGCTGTGGTGCCAGGGCTATTCGGAGCCCGGGGCGG
GCAGTGACCTCGCCAACGTCGCGACCACCGCGGTGCTCGATGAGGAGGGCGAGCACTGGCTCATCAATGGACAGAAGGTG
TGGACGTCGCTGGCGCACTGGGCGCAGTGGTGCTTCGTCGTCGCCCGCACCGAGAAGGGGTCCAAGCGGCACGCCGGGCT
GTCCTATCTGCTGGTGCCGCTGGACCAGCCCGGTGTCGAGGTGCGGCCGATCATCCAGCTGACCGGCGACTCCGAGTTCA
ACGAGGTGTTCTTCGACGATGCCCGCACCGACGCGTCCCTCGTCGTGGGGGAGCCCGGCGACGGCTGGCGCGTCGCGATG
GGCACGCTCACCTTCGAACGCGGTGTGTCCACACTCGGCCAGCAGATCGAGTACGCCCGCGAACTGTCCGGCATCGCGGA
ACTCGCGAAGAGGACCGGTGCCGCCGACGATCCGCTGATCCGCGAGCGGCTCACCCGGTCGTGGGTCGGCCTGCGCACGA
TGCGGTCCTACGCGCTGGCGACAATGGACGTCGAACAGCCGGGGCAAGATAATATCTCGAAGCTGTTGTGGGCCAACTGG
CATCGCGAACTCGGCGAGATCGCGATGGACATCGAGGGTATGGCGGGCCTGACCCTGAAAGACGGCGACTTCGACGAATG
GCAGCGGCTGTACCTGTTCTCGCGCGCCGACACCATCTACGGCGGCTCGAACGAGGTGCAGCGCAACATCATCGCCGAGC
GCGTGCTCGGCCTACCGAGGGAGTCAAAAGGATGA

Upstream 100 bases:

>100_bases
GCTCTGCAATCCGGTCGAGAACGGCAGGGATCGTCCTCGGGGCGGTCGTCATCGATGCTCCCTCTAACAAAGCAAGTGCT
TGGTAGGTTAGCCTACAGGG

Downstream 100 bases:

>100_bases
GCGATCTTTCCGTCGCGCCGAAGGAGATCGATGGCCACGGTCTCCTGGCGGGCAAGGTCGTACTCGTGACCGCCGCCGCC
GGCACCGGCATCGGGTCGAC

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MIEVQEFRAEVRQWLADNLVGEYAALKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWPVEHGGRGLSVAHRVAFYEEY
AIANAPAKVNHFGEELLGPTLIAYGTPEQQQRFLPKIVEVTELWCQGYSEPGAGSDLANVATTAVLDEEGEHWLINGQKV
WTSLAHWAQWCFVVARTEKGSKRHAGLSYLLVPLDQPGVEVRPIIQLTGDSEFNEVFFDDARTDASLVVGEPGDGWRVAM
GTLTFERGVSTLGQQIEYARELSGIAELAKRTGAADDPLIRERLTRSWVGLRTMRSYALATMDVEQPGQDNISKLLWANW
HRELGEIAMDIEGMAGLTLKDGDFDEWQRLYLFSRADTIYGGSNEVQRNIIAERVLGLPRESKG

Sequences:

>Translated_384_residues
MIEVQEFRAEVRQWLADNLVGEYAALKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWPVEHGGRGLSVAHRVAFYEEY
AIANAPAKVNHFGEELLGPTLIAYGTPEQQQRFLPKIVEVTELWCQGYSEPGAGSDLANVATTAVLDEEGEHWLINGQKV
WTSLAHWAQWCFVVARTEKGSKRHAGLSYLLVPLDQPGVEVRPIIQLTGDSEFNEVFFDDARTDASLVVGEPGDGWRVAM
GTLTFERGVSTLGQQIEYARELSGIAELAKRTGAADDPLIRERLTRSWVGLRTMRSYALATMDVEQPGQDNISKLLWANW
HRELGEIAMDIEGMAGLTLKDGDFDEWQRLYLFSRADTIYGGSNEVQRNIIAERVLGLPRESKG
>Mature_384_residues
MIEVQEFRAEVRQWLADNLVGEYAALKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWPVEHGGRGLSVAHRVAFYEEY
AIANAPAKVNHFGEELLGPTLIAYGTPEQQQRFLPKIVEVTELWCQGYSEPGAGSDLANVATTAVLDEEGEHWLINGQKV
WTSLAHWAQWCFVVARTEKGSKRHAGLSYLLVPLDQPGVEVRPIIQLTGDSEFNEVFFDDARTDASLVVGEPGDGWRVAM
GTLTFERGVSTLGQQIEYARELSGIAELAKRTGAADDPLIRERLTRSWVGLRTMRSYALATMDVEQPGQDNISKLLWANW
HRELGEIAMDIEGMAGLTLKDGDFDEWQRLYLFSRADTIYGGSNEVQRNIIAERVLGLPRESKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=346, Percent_Identity=28.0346820809249, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4557231, Length=382, Percent_Identity=24.0837696335079, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI187960098, Length=382, Percent_Identity=24.0837696335079, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI21361497, Length=345, Percent_Identity=26.9565217391304, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI4501857, Length=386, Percent_Identity=24.0932642487047, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI4501859, Length=340, Percent_Identity=27.3529411764706, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI226958414, Length=214, Percent_Identity=26.6355140186916, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI226958412, Length=220, Percent_Identity=26.8181818181818, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI76496475, Length=353, Percent_Identity=25.7790368271955, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI4557235, Length=353, Percent_Identity=25.7790368271955, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI48976061, Length=300, Percent_Identity=26.3333333333333, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI211971008, Length=293, Percent_Identity=26.2798634812287, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87081958, Length=352, Percent_Identity=24.7159090909091, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786223, Length=349, Percent_Identity=24.6418338108883, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17570075, Length=391, Percent_Identity=26.3427109974425, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17534899, Length=337, Percent_Identity=26.1127596439169, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17551932, Length=345, Percent_Identity=26.3768115942029, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17569725, Length=350, Percent_Identity=25.1428571428571, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17508101, Length=349, Percent_Identity=27.2206303724928, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=347, Percent_Identity=27.0893371757925, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538396, Length=210, Percent_Identity=27.6190476190476, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17506239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=192, Percent_Identity=32.2916666666667, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71985184, Length=149, Percent_Identity=31.5436241610738, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71985192, Length=146, Percent_Identity=31.5068493150685, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71990804, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=389, Percent_Identity=26.7352185089974, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24646207, Length=352, Percent_Identity=27.5568181818182, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281363737, Length=346, Percent_Identity=26.5895953757225, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24660351, Length=297, Percent_Identity=26.5993265993266, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21355753, Length=221, Percent_Identity=27.1493212669683, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666513, Length=237, Percent_Identity=27.8481012658228, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42706; Mature: 42706

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEVQEFRAEVRQWLADNLVGEYAALKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCC
VEHGGRGLSVAHRVAFYEEYAIANAPAKVNHFGEELLGPTLIAYGTPEQQQRFLPKIVEV
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
TELWCQGYSEPGAGSDLANVATTAVLDEEGEHWLINGQKVWTSLAHWAQWCFVVARTEKG
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHEEECCCC
SKRHAGLSYLLVPLDQPGVEVRPIIQLTGDSEFNEVFFDDARTDASLVVGEPGDGWRVAM
CCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEE
GTLTFERGVSTLGQQIEYARELSGIAELAKRTGAADDPLIRERLTRSWVGLRTMRSYALA
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TMDVEQPGQDNISKLLWANWHRELGEIAMDIEGMAGLTLKDGDFDEWQRLYLFSRADTIY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHCCCEEE
GGSNEVQRNIIAERVLGLPRESKG
CCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIEVQEFRAEVRQWLADNLVGEYAALKGLGGPGREHEAFEERLAWNRHLAAAGLTCLGWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCC
VEHGGRGLSVAHRVAFYEEYAIANAPAKVNHFGEELLGPTLIAYGTPEQQQRFLPKIVEV
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
TELWCQGYSEPGAGSDLANVATTAVLDEEGEHWLINGQKVWTSLAHWAQWCFVVARTEKG
HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHEEECCCC
SKRHAGLSYLLVPLDQPGVEVRPIIQLTGDSEFNEVFFDDARTDASLVVGEPGDGWRVAM
CCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEE
GTLTFERGVSTLGQQIEYARELSGIAELAKRTGAADDPLIRERLTRSWVGLRTMRSYALA
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TMDVEQPGQDNISKLLWANWHRELGEIAMDIEGMAGLTLKDGDFDEWQRLYLFSRADTIY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHCCCEEE
GGSNEVQRNIIAERVLGLPRESKG
CCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]