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The map label for this gene is ycdK [C]

Identifier: 108800487

GI number: 108800487

Start: 3748966

End: 3749370

Strand: Reverse

Name: ycdK [C]

Synonym: Mmcs_3521

Alternate gene names: 108800487

Gene position: 3749370-3748966 (Counterclockwise)

Preceding gene: 108800489

Following gene: 108800486

Centisome position: 65.72

GC content: 71.11

Gene sequence:

>405_bases
ATGGCGATCCGATCCTTCACTTTCACACCGGACGACGGCGTTCCGCCCGCGGTCGCGCCCTTCGCCCACGCGACGGCCGC
GGGACAGACGCTCTACGTCACCGGGCAGATGCCGACCGACCACACCGGCGAGATCGTCGGCACCGGCATCGAGGCGCAGA
CCGATCAGGTGCTGCGGAACCTGTTGCGCGTCACCCGACTGTGCGGTGGCGGCCTCGACGACGTGGTCGCGGTCCGGGCG
TACCTGACCGACTGGGCGGAGTACGCGGCGTTCAACACCGCCTACGCCGCCTGGTTTCCCGACCGGCTGCCGTCACGGAC
GTGCGTCGGGGTCACCGGGCTGGCGGTCGGTGCCCGCGTCGAGATCGACTGGACGTGCTGGCGCGCCGACGGATGGGGAC
GCTGA

Upstream 100 bases:

>100_bases
TGGTCCACTGGATCACGCGCACCGGGCGCCCGGTGGTCGGTGGGGTCATCTGGCGGCGCCTCCTCGTCGAGCCTGCAGTC
GCTCCTAGAGACTAGGGGTG

Downstream 100 bases:

>100_bases
CCGTCATCCACAGCGCGGCGTTCATCCACAACCACGCCATCCCGGCCGCCGGATGCGGCTGATCCGACGGACGGCGTCCC
TACCGTCGGGCGCATGCGGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAIRSFTFTPDDGVPPAVAPFAHATAAGQTLYVTGQMPTDHTGEIVGTGIEAQTDQVLRNLLRVTRLCGGGLDDVVAVRA
YLTDWAEYAAFNTAYAAWFPDRLPSRTCVGVTGLAVGARVEIDWTCWRADGWGR

Sequences:

>Translated_134_residues
MAIRSFTFTPDDGVPPAVAPFAHATAAGQTLYVTGQMPTDHTGEIVGTGIEAQTDQVLRNLLRVTRLCGGGLDDVVAVRA
YLTDWAEYAAFNTAYAAWFPDRLPSRTCVGVTGLAVGARVEIDWTCWRADGWGR
>Mature_133_residues
AIRSFTFTPDDGVPPAVAPFAHATAAGQTLYVTGQMPTDHTGEIVGTGIEAQTDQVLRNLLRVTRLCGGGLDDVVAVRAY
LTDWAEYAAFNTAYAAWFPDRLPSRTCVGVTGLAVGARVEIDWTCWRADGWGR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=110, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787245, Length=106, Percent_Identity=35.8490566037736, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=110, Percent_Identity=34.5454545454545, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=110, Percent_Identity=34.5454545454545, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982068, Length=110, Percent_Identity=34.5454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=33.0275229357798, Blast_Score=82, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=30.0970873786408, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14433; Mature: 14302

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRSFTFTPDDGVPPAVAPFAHATAAGQTLYVTGQMPTDHTGEIVGTGIEAQTDQVLRN
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHH
LLRVTRLCGGGLDDVVAVRAYLTDWAEYAAFNTAYAAWFPDRLPSRTCVGVTGLAVGARV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEECEECEEECEEE
EIDWTCWRADGWGR
EEEEEEEECCCCCC
>Mature Secondary Structure 
AIRSFTFTPDDGVPPAVAPFAHATAAGQTLYVTGQMPTDHTGEIVGTGIEAQTDQVLRN
CCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHH
LLRVTRLCGGGLDDVVAVRAYLTDWAEYAAFNTAYAAWFPDRLPSRTCVGVTGLAVGARV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEECEECEEECEEE
EIDWTCWRADGWGR
EEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]