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The map label for this gene is hybD [C]

Identifier: 108800381

GI number: 108800381

Start: 3625052

End: 3625552

Strand: Reverse

Name: hybD [C]

Synonym: Mmcs_3415

Alternate gene names: 108800381

Gene position: 3625552-3625052 (Counterclockwise)

Preceding gene: 108800382

Following gene: 108800380

Centisome position: 63.55

GC content: 72.65

Gene sequence:

>501_bases
ATGAGCGACATCGTCGTGATCGGCGTCGGCAACAGCTGTCGCCGGGACGACGGTGTGGGCCCGGCCGTCGCTTCGGCCGT
CGATGCCCGCGGGACTCCCGGCGTCCGGGTGCTCAGCGTCGCCGACGACCCGTGCGCGATCCTCGACGCGTGGGCCGGGG
CCCGGCTGGCCGTGGTGATCGATGCCGCGGTCGCGACACCGTCGACACCGGGTCGGATCCACCGTTGCGCCGCCGATCAA
CTGCCGGCGTCGTCGACCGTGACGTCGCATGCCGTCGACCTCGCCACGGTGCTCGAGTTGGGTCGAGCGCTGGACCGGAT
GCCCGGCGAGCTTCTGGTGTTCGCCGTCGAAGCCGCCGACACCGGGGTGGGACTGGGCTTGTCCGCCACGGTCGCCGCGG
CCGTGCCGGAGGTGGTCGACGCCGTGCTGGCCGAGATCGAGCACATGCCGTCAGGCCGCCAACAAGGGTCCAAATGCCCT
GGCCGCGGGTCGCCGCGGTGA

Upstream 100 bases:

>100_bases
ACGATGCGGAGTTGACGTCGTTGTGCGAGCGGTCGATCCGCAACCACGACCCGTGCATCTCGTGTTCGGCGCACTTCCTG
ACGCTCACCGTCGAGCGCGG

Downstream 100 bases:

>100_bases
ACCACGATCACATCGGGAGGTGACGCTGGTGAGCACTCATTGGCTGGTGATGGACCACTCGAGGGACGGTGACGGCGCGC
CGTACCGCACCCGGTTGGCC

Product: peptidase M52, hydrogen uptake protein

Products: NA

Alternate protein names: Peptidase; Peptidase M

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSDIVVIGVGNSCRRDDGVGPAVASAVDARGTPGVRVLSVADDPCAILDAWAGARLAVVIDAAVATPSTPGRIHRCAADQ
LPASSTVTSHAVDLATVLELGRALDRMPGELLVFAVEAADTGVGLGLSATVAAAVPEVVDAVLAEIEHMPSGRQQGSKCP
GRGSPR

Sequences:

>Translated_166_residues
MSDIVVIGVGNSCRRDDGVGPAVASAVDARGTPGVRVLSVADDPCAILDAWAGARLAVVIDAAVATPSTPGRIHRCAADQ
LPASSTVTSHAVDLATVLELGRALDRMPGELLVFAVEAADTGVGLGLSATVAAAVPEVVDAVLAEIEHMPSGRQQGSKCP
GRGSPR
>Mature_165_residues
SDIVVIGVGNSCRRDDGVGPAVASAVDARGTPGVRVLSVADDPCAILDAWAGARLAVVIDAAVATPSTPGRIHRCAADQL
PASSTVTSHAVDLATVLELGRALDRMPGELLVFAVEAADTGVGLGLSATVAAAVPEVVDAVLAEIEHMPSGRQQGSKCPG
RGSPR

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 16653; Mature: 16522

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIVVIGVGNSCRRDDGVGPAVASAVDARGTPGVRVLSVADDPCAILDAWAGARLAVVI
CCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHCCCCEEEEEE
DAAVATPSTPGRIHRCAADQLPASSTVTSHAVDLATVLELGRALDRMPGELLVFAVEAAD
EHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
TGVGLGLSATVAAAVPEVVDAVLAEIEHMPSGRQQGSKCPGRGSPR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDIVVIGVGNSCRRDDGVGPAVASAVDARGTPGVRVLSVADDPCAILDAWAGARLAVVI
CCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHCCCCEEEEEE
DAAVATPSTPGRIHRCAADQLPASSTVTSHAVDLATVLELGRALDRMPGELLVFAVEAAD
EHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
TGVGLGLSATVAAAVPEVVDAVLAEIEHMPSGRQQGSKCPGRGSPR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA