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The map label for this gene is slyD [H]

Identifier: 108763800

GI number: 108763800

Start: 2796465

End: 2796950

Strand: Direct

Name: slyD [H]

Synonym: MXAN_2404

Alternate gene names: 108763800

Gene position: 2796465-2796950 (Clockwise)

Preceding gene: 108763823

Following gene: 108762774

Centisome position: 30.6

GC content: 70.58

Gene sequence:

>486_bases
ATGAGGGTCGCCAAGGATTCCGTCGTCTCGCTCGAATACCGGCTGCACCTGGGAGACGGCCAGGTCATCGACCAGAGCGC
GCCCGAGCAGCCGCTCTCCTACCTGCACGGGCACCGGCAGATCGTTCCGGGGCTCGAAGGGGCCCTGGAGGGCATGAGCT
TCGGGGAGAGCAAGCAGGTGGTGGTGGCGCCCGGCCAGGGCTACGGCGAGCACGACCCAGCGGGCGTGCGCACCGTGCCT
CGCAGCATGCTGCCGCCCGGCTTCTCGCCGCAGGCCGGCCAGTCGCTGATGGCGCAGACGGACCAGGGCGACATCCCGCT
GCGCATCCAGGAAGTGCGCGATGACGGCGTCGTGGTGGACCTCAACCACCCGCTGGCCGGCAAGACGCTGCACTTCGACG
TCACCGTGAAGGGCGTGCGTGCCGCCACGCAGGAAGAACTCTCCCACGGCCACGTCCACGGGCCGGGCGGGCATGCGCAC
GGCTGA

Upstream 100 bases:

>100_bases
GGGGCCGTGGACCCCTCTGCTTCCTGACGCCGGGCATTTCCCGCCGCACCTTCCTCACAGCAAACGCAGTCCCACCGCAG
TCATCGGCAAGGAGCCCCGC

Downstream 100 bases:

>100_bases
CGTAGGCTCCTGACGCGGCGCGGCCAGCCTTCCAGGTTGGCCCGCCCCGTCAAACGCGGTGCTCGCCGGGGGGCGTGGGG
GTGAACTATCTTCGCCGCCC

Product: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MRVAKDSVVSLEYRLHLGDGQVIDQSAPEQPLSYLHGHRQIVPGLEGALEGMSFGESKQVVVAPGQGYGEHDPAGVRTVP
RSMLPPGFSPQAGQSLMAQTDQGDIPLRIQEVRDDGVVVDLNHPLAGKTLHFDVTVKGVRAATQEELSHGHVHGPGGHAH
G

Sequences:

>Translated_161_residues
MRVAKDSVVSLEYRLHLGDGQVIDQSAPEQPLSYLHGHRQIVPGLEGALEGMSFGESKQVVVAPGQGYGEHDPAGVRTVP
RSMLPPGFSPQAGQSLMAQTDQGDIPLRIQEVRDDGVVVDLNHPLAGKTLHFDVTVKGVRAATQEELSHGHVHGPGGHAH
G
>Mature_161_residues
MRVAKDSVVSLEYRLHLGDGQVIDQSAPEQPLSYLHGHRQIVPGLEGALEGMSFGESKQVVVAPGQGYGEHDPAGVRTVP
RSMLPPGFSPQAGQSLMAQTDQGDIPLRIQEVRDDGVVVDLNHPLAGKTLHFDVTVKGVRAATQEELSHGHVHGPGGHAH
G

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=149, Percent_Identity=46.3087248322148, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1786211, Length=144, Percent_Identity=28.4722222222222, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17109; Mature: 17109

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAKDSVVSLEYRLHLGDGQVIDQSAPEQPLSYLHGHRQIVPGLEGALEGMSFGESKQV
CCCCCCCEEEEEEEEECCCCEEECCCCCCHHHHHHCCCCEECCCHHHHHHCCCCCCCCEE
VVAPGQGYGEHDPAGVRTVPRSMLPPGFSPQAGQSLMAQTDQGDIPLRIQEVRDDGVVVD
EEECCCCCCCCCCCCCEECCHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCEEEE
LNHPLAGKTLHFDVTVKGVRAATQEELSHGHVHGPGGHAHG
CCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRVAKDSVVSLEYRLHLGDGQVIDQSAPEQPLSYLHGHRQIVPGLEGALEGMSFGESKQV
CCCCCCCEEEEEEEEECCCCEEECCCCCCHHHHHHCCCCEECCCHHHHHHCCCCCCCCEE
VVAPGQGYGEHDPAGVRTVPRSMLPPGFSPQAGQSLMAQTDQGDIPLRIQEVRDDGVVVD
EEECCCCCCCCCCCCCEECCHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCEEEE
LNHPLAGKTLHFDVTVKGVRAATQEELSHGHVHGPGGHAHG
CCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]