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The map label for this gene is fni [H]

Identifier: 108762094

GI number: 108762094

Start: 6276084

End: 6277142

Strand: Reverse

Name: fni [H]

Synonym: MXAN_5021

Alternate gene names: 108762094

Gene position: 6277142-6276084 (Counterclockwise)

Preceding gene: 108758731

Following gene: 108759501

Centisome position: 68.68

GC content: 71.29

Gene sequence:

>1059_bases
ATGGGCGACGACATCACTGCCAGACGCAAGGACGCGCATCTCGACCTTTGCTCGACGGGGGACGTCGAACCCAGCGGAAA
CAGCACCCTGCTGGAGTGCGTCAAGCTGGTCCACTGCGCGATGCCGGAAATGTCCGTGGAGGACGTGGACCTGTCCACGG
CCTTCCTGGGCAAGCGGCTGCGCTACCCGCTGCTCGTCACCGGCATGACGGGTGGGACGGAGCGTGCGGGTGCGGTGAAT
CGCGACCTGGCGCTGCTCGCCGAGCGCCACGGCCTGGCCTTCGGCGTGGGCAGCCAGCGCGCCATGTCGGAGGACGCCTC
GCGGGCCGCGTCCTTCCAGGTGCGGCAGGTGGCGCCCACGGTGGCGCTCCTGGGCAACATCGGCATGTTCCAGGCCATCG
GGCTGGGCGTGGATGGGACGCGCCGGCTGGTGGACGGCATTGGCGCGGACGGGCTGGCGCTGCACCTCAACGCGGGCCAG
GAGCTGACGCAGCCGGAAGGCGACCGGGACTTCCAGGGCGGCTACCGCGTGGTGGAGCTGCTGGTGAAGGCCTTTGGCGA
CCGGCTGCTGGTGAAGGAGACGGGCTGCGGCATTGGCCCGGACGTCGCGCGGCGGTTGGTGGACCTGGGCGTGCGGAACA
TCGACGTGTCCGGTCTGGGCGGGACGTCCTGGGTGCGCGTGGAACAACTTCGCGCGTCGGGCGTACAGGCACAGTTGGGG
GCGGAGTTCAGCGCGTGGGGCATTCCCACGGCGGCGGCGTTGGCCTCCGTGCGCCGGGCCGTGGGCCCGGACGTCCACCT
GGTGGCGAGCGGTGGCCTGCGCACGGGGCTGGACGCGGCCAAGGTGCTGGCGCTGGGGGCGAACCTGGCTGGCATGGCGC
TGCCGTTGTTCCGGGCGCAGCAGGCGGGTGGGCTCGAGGCGGCGGAGGCGGCGCTGGAGGTCATCCTGGCGAGTCTGCGG
CAGGCGCTCGTGCTGACGGGAAGCAGAAGCTGCGCTGAACTGAGACAGCGGCCCCGGGTGGTCACCGGAGAGTTGAAGGA
TTGGTTGGCGGCGCTGTAG

Upstream 100 bases:

>100_bases
GGCCCTTTGGCTTGCGCCTTGGCCGCCGGGCTTGCTAGGAAACCTCGGTCATTCGGGCACTTACGCGCCGTGGCACCCAG
GCGGACCGGACTTCAACGAG

Downstream 100 bases:

>100_bases
AGGGTGGCCGCGCCGAAGTCTGGAAGGAAGAACATGTCTGACACCGTGACGTCCCGGCTTCCCGGGTTCCACAAGCTGCC
GATGGAGGAGCGCCACGCGC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MGDDITARRKDAHLDLCSTGDVEPSGNSTLLECVKLVHCAMPEMSVEDVDLSTAFLGKRLRYPLLVTGMTGGTERAGAVN
RDLALLAERHGLAFGVGSQRAMSEDASRAASFQVRQVAPTVALLGNIGMFQAIGLGVDGTRRLVDGIGADGLALHLNAGQ
ELTQPEGDRDFQGGYRVVELLVKAFGDRLLVKETGCGIGPDVARRLVDLGVRNIDVSGLGGTSWVRVEQLRASGVQAQLG
AEFSAWGIPTAAALASVRRAVGPDVHLVASGGLRTGLDAAKVLALGANLAGMALPLFRAQQAGGLEAAEAALEVILASLR
QALVLTGSRSCAELRQRPRVVTGELKDWLAAL

Sequences:

>Translated_352_residues
MGDDITARRKDAHLDLCSTGDVEPSGNSTLLECVKLVHCAMPEMSVEDVDLSTAFLGKRLRYPLLVTGMTGGTERAGAVN
RDLALLAERHGLAFGVGSQRAMSEDASRAASFQVRQVAPTVALLGNIGMFQAIGLGVDGTRRLVDGIGADGLALHLNAGQ
ELTQPEGDRDFQGGYRVVELLVKAFGDRLLVKETGCGIGPDVARRLVDLGVRNIDVSGLGGTSWVRVEQLRASGVQAQLG
AEFSAWGIPTAAALASVRRAVGPDVHLVASGGLRTGLDAAKVLALGANLAGMALPLFRAQQAGGLEAAEAALEVILASLR
QALVLTGSRSCAELRQRPRVVTGELKDWLAAL
>Mature_351_residues
GDDITARRKDAHLDLCSTGDVEPSGNSTLLECVKLVHCAMPEMSVEDVDLSTAFLGKRLRYPLLVTGMTGGTERAGAVNR
DLALLAERHGLAFGVGSQRAMSEDASRAASFQVRQVAPTVALLGNIGMFQAIGLGVDGTRRLVDGIGADGLALHLNAGQE
LTQPEGDRDFQGGYRVVELLVKAFGDRLLVKETGCGIGPDVARRLVDLGVRNIDVSGLGGTSWVRVEQLRASGVQAQLGA
EFSAWGIPTAAALASVRRAVGPDVHLVASGGLRTGLDAAKVLALGANLAGMALPLFRAQQAGGLEAAEAALEVILASLRQ
ALVLTGSRSCAELRQRPRVVTGELKDWLAAL

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 36760; Mature: 36628

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDITARRKDAHLDLCSTGDVEPSGNSTLLECVKLVHCAMPEMSVEDVDLSTAFLGKRL
CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
RYPLLVTGMTGGTERAGAVNRDLALLAERHGLAFGVGSQRAMSEDASRAASFQVRQVAPT
CCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
VALLGNIGMFQAIGLGVDGTRRLVDGIGADGLALHLNAGQELTQPEGDRDFQGGYRVVEL
HHHHHCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LVKAFGDRLLVKETGCGIGPDVARRLVDLGVRNIDVSGLGGTSWVRVEQLRASGVQAQLG
HHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHC
AEFSAWGIPTAAALASVRRAVGPDVHLVASGGLRTGLDAAKVLALGANLAGMALPLFRAQ
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
QAGGLEAAEAALEVILASLRQALVLTGSRSCAELRQRPRVVTGELKDWLAAL
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEHHHHHHHHHCC
>Mature Secondary Structure 
GDDITARRKDAHLDLCSTGDVEPSGNSTLLECVKLVHCAMPEMSVEDVDLSTAFLGKRL
CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC
RYPLLVTGMTGGTERAGAVNRDLALLAERHGLAFGVGSQRAMSEDASRAASFQVRQVAPT
CCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
VALLGNIGMFQAIGLGVDGTRRLVDGIGADGLALHLNAGQELTQPEGDRDFQGGYRVVEL
HHHHHCCCHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LVKAFGDRLLVKETGCGIGPDVARRLVDLGVRNIDVSGLGGTSWVRVEQLRASGVQAQLG
HHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHC
AEFSAWGIPTAAALASVRRAVGPDVHLVASGGLRTGLDAAKVLALGANLAGMALPLFRAQ
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
QAGGLEAAEAALEVILASLRQALVLTGSRSCAELRQRPRVVTGELKDWLAAL
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA