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The map label for this gene is rtcB [H]

Identifier: 108761016

GI number: 108761016

Start: 6229668

End: 6230903

Strand: Reverse

Name: rtcB [H]

Synonym: MXAN_4982

Alternate gene names: 108761016

Gene position: 6230903-6229668 (Counterclockwise)

Preceding gene: 108764003

Following gene: 108762499

Centisome position: 68.17

GC content: 67.88

Gene sequence:

>1236_bases
ATGAGCCGCATCAACGGGAACTACGAGGTGCTGTCGGACGAGGCGGGCCGCCCCATCAAGGCGTGGACGGTGGGGGTTCC
GTTCGAGGACGAGGCGAAGAAGCAGCTCCGCAACCTGCGTGGCCTCCCCTTCATCCACAAGTGGGTCTCGGTGATGCCGG
ACGTGCACCGCGGCTACGGCGCGACGGTGGGAAGCGTGGTCCCCACCGTGGGGGCGGTGGTGCCGGCAGCGGTGGGCGTG
GACATCGGTTGCGGGATGATCGCCGTTCGCACGACGCTGCGGGCGGACCAGCTCCCGGACTCGCTGCGTGGGGTTCGCTC
GGCGATTGAGCGCGCGGTGCCGCATGGCCGCTCCGACAACGGTGGCCGCAACGACGTAGGGGCGTGGCGTGTGGCGCCCG
CGCGGCACCAGAAGGAGTGGGCGCGGTTGGTGGAGGGGTACGACCGCATCGTCGGGAAGCATCCGCGCATCGGCCGTGGG
CCGGAGCTGTCGCACCTGGGGACGCTGGGAACGGGGAACCACTTCATCGAGCTGTGCCTCGATGAGTCGGATGGCGTGTG
GCTGATGTTGCACTCGGGTTCGCGCGGGGTGGGGAACCGCATCGGGAGCTACTTCATCGAGCTGGCGAAGGAGGACATGC
GCCGCTGGTTCATCAATCTCCCGGACGGGGACCTGGCGTACCTGGCGGAAGGGACGGAGCACTTCGAGGACTACGTCTTC
GCGGTGAGCTGGGCGCAGGACTTCGCCGCGACGAACCGCGCGCTGATGCTGCAAGAGGCGGTGGATGCGCTGCAGTTGAG
CGGTGAGCTGCCTCCGTTCGAGCTGAAGGACGCGGCGGTGAACTGCCACCACAACTACATCGCCCGTGAGCATCACTTCG
GGAAGAACTGCTTCGTGACGCGCAAGGGGGCGGTGCGGGCACGAGAGGGTGACCTCGGGATCATCCCCGGAAGCATGGGG
GCGCGTTCGTTCATTGTCCGCGGGAAGGGGAACGCGGACAGCTTCCATTCCTGCAGCCACGGTGCGGGCCGGGTGATGTC
GCGTGAGGCGGCGAAGCGGCGCTTCACGGTGGAGGACCACGTGAAGGCGACCGCCGGCGTGGAGTGCCGCAAGGACGTGG
ACGTCATTGACGAGACGCCGGCTGCGTACAAGCCCATCGACGCGGTGATGGCGGCGCAGGCGGACCTGGTGGAAGTGGTC
CACACCCTGAAGCAGGTCGTGTGCGTGAAGGGCTAG

Upstream 100 bases:

>100_bases
TGGAGGGCTCCCCTCGGAAGCGGTGTTGGCACGCCGGCTGCTCTAGGCCTCCTCCGTGATCGGGACACAGCGCCCGGCGG
ACGACTGAAAGGTGGAGACG

Downstream 100 bases:

>100_bases
AAACCCAGAGGTGACCATGCCGGGATGAAGACACCGAGGCGCCCGCGCTCCCCAAGAGGCCGAAAGGCCGCCAGGATGGG
GACGCGGGCGCCGCTATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYGATVGSVVPTVGAVVPAAVGV
DIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDNGGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRG
PELSHLGTLGTGNHFIELCLDESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
AVSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKNCFVTRKGAVRAREGDLGIIPGSMG
ARSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDHVKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVV
HTLKQVVCVKG

Sequences:

>Translated_411_residues
MSRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYGATVGSVVPTVGAVVPAAVGV
DIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDNGGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRG
PELSHLGTLGTGNHFIELCLDESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
AVSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKNCFVTRKGAVRAREGDLGIIPGSMG
ARSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDHVKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVV
HTLKQVVCVKG
>Mature_410_residues
SRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYGATVGSVVPTVGAVVPAAVGVD
IGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDNGGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRGP
ELSHLGTLGTGNHFIELCLDESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVFA
VSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKNCFVTRKGAVRAREGDLGIIPGSMGA
RSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDHVKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVVH
TLKQVVCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=446, Percent_Identity=25.7847533632287, Blast_Score=112, Evalue=5e-25,
Organism=Escherichia coli, GI2367224, Length=408, Percent_Identity=59.8039215686275, Blast_Score=506, Evalue=1e-145,
Organism=Caenorhabditis elegans, GI17506665, Length=419, Percent_Identity=26.0143198090692, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24585217, Length=429, Percent_Identity=27.2727272727273, Blast_Score=101, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44926; Mature: 44794

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYG
CCCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCC
ATVGSVVPTVGAVVPAAVGVDIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDN
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
GGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRGPELSHLGTLGTGNHFIELCL
CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEE
DESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHCCHHHHHHHHH
AVSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKNCFVT
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
RKGAVRAREGDLGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDH
ECCCCEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
VKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVVHTLKQVVCVKG
HHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRINGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVSVMPDVHRGYG
CCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCC
ATVGSVVPTVGAVVPAAVGVDIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDN
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
GGRNDVGAWRVAPARHQKEWARLVEGYDRIVGKHPRIGRGPELSHLGTLGTGNHFIELCL
CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEE
DESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHHHCCHHHHHHHHH
AVSWAQDFAATNRALMLQEAVDALQLSGELPPFELKDAAVNCHHNYIAREHHFGKNCFVT
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
RKGAVRAREGDLGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDH
ECCCCEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
VKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVVHTLKQVVCVKG
HHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]