Click here to switch to the map view.

The map label for this gene is sigZ [H]

Identifier: 108760680

GI number: 108760680

Start: 6558384

End: 6558953

Strand: Direct

Name: sigZ [H]

Synonym: MXAN_5263

Alternate gene names: 108760680

Gene position: 6558384-6558953 (Clockwise)

Preceding gene: 108763906

Following gene: 108763219

Centisome position: 71.76

GC content: 71.93

Gene sequence:

>570_bases
ATGTGCGAGGCTGGGGCCATGTCCCCGGAGGTCCTCGCGCTCCTGCTCCAGAACCGCCAGCGCTTCCTCGCCTTCCTGAC
CCCACACGTCGGGAGCGTCGAGGCGGCGGAGGAGGTGCTCCAGGCCGCGCTGCTCAAGAGCGTGGAACGCGGGAGCACCC
TGCGTGAGGAGGAGCGGGCGGTGGCCTGGTTCTACCGCCTGCTTCGCAACGCGCTCATCGACCGCTACCGGCACGAGCAG
CGCCAGGGGCGCGCCCTGCGGGCCTTCGCCGAGGAGAGCCCCCTGTCCACCGAGGACGCGGCGGAACTGGAGCGGACCGT
CTGCGCCTGTGTCTCCACGCTCACCACCACCCTGAAGCCGGAGTACTCCGACGCGCTCCAGCGGGTGGACCTGGACGGGC
AGACCCTGGCGGAGTTCGCGGAGGCAGCCGGCATCACCCACACCAACGCGAAGGTGCGCCTCCACCGGGCCCGGCAGGCG
CTGGGCCGGAGGCTGGAGCAGGCGTGCGGAACCACTTGCTGCCGCAAGGGCTGCGTGGACTGCCCCTGCGAGGAGGCGGG
CGGACTGTAA

Upstream 100 bases:

>100_bases
CTTCCGGGCCCGCTCTGACACGCGAGGCAACGCGCTGTGGGCCATGCCCGCCACCGTGGCCTGTCCCACGCAGGAAGTCC
ACGCCCGCTGATGCACCGCG

Downstream 100 bases:

>100_bases
CCGGGGCCCAGGCGCGTCGTCAGGAGGGAGAACTGGAACGAAGGAGCCGTTCTCCATGGCGGGACACTCGCACTCCCACT
CGCACTCCCACTCGCACTCT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MCEAGAMSPEVLALLLQNRQRFLAFLTPHVGSVEAAEEVLQAALLKSVERGSTLREEERAVAWFYRLLRNALIDRYRHEQ
RQGRALRAFAEESPLSTEDAAELERTVCACVSTLTTTLKPEYSDALQRVDLDGQTLAEFAEAAGITHTNAKVRLHRARQA
LGRRLEQACGTTCCRKGCVDCPCEEAGGL

Sequences:

>Translated_189_residues
MCEAGAMSPEVLALLLQNRQRFLAFLTPHVGSVEAAEEVLQAALLKSVERGSTLREEERAVAWFYRLLRNALIDRYRHEQ
RQGRALRAFAEESPLSTEDAAELERTVCACVSTLTTTLKPEYSDALQRVDLDGQTLAEFAEAAGITHTNAKVRLHRARQA
LGRRLEQACGTTCCRKGCVDCPCEEAGGL
>Mature_189_residues
MCEAGAMSPEVLALLLQNRQRFLAFLTPHVGSVEAAEEVLQAALLKSVERGSTLREEERAVAWFYRLLRNALIDRYRHEQ
RQGRALRAFAEESPLSTEDAAELERTVCACVSTLTTTLKPEYSDALQRVDLDGQTLAEFAEAAGITHTNAKVRLHRARQA
LGRRLEQACGTTCCRKGCVDCPCEEAGGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20892; Mature: 20892

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEAGAMSPEVLALLLQNRQRFLAFLTPHVGSVEAAEEVLQAALLKSVERGSTLREEERA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VAWFYRLLRNALIDRYRHEQRQGRALRAFAEESPLSTEDAAELERTVCACVSTLTTTLKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
EYSDALQRVDLDGQTLAEFAEAAGITHTNAKVRLHRARQALGRRLEQACGTTCCRKGCVD
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
CPCEEAGGL
CCCHHCCCC
>Mature Secondary Structure
MCEAGAMSPEVLALLLQNRQRFLAFLTPHVGSVEAAEEVLQAALLKSVERGSTLREEERA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VAWFYRLLRNALIDRYRHEQRQGRALRAFAEESPLSTEDAAELERTVCACVSTLTTTLKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
EYSDALQRVDLDGQTLAEFAEAAGITHTNAKVRLHRARQALGRRLEQACGTTCCRKGCVD
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
CPCEEAGGL
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]