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The map label for this gene is yebA [C]

Identifier: 108563918

GI number: 108563918

Start: 1554046

End: 1554972

Strand: Reverse

Name: yebA [C]

Synonym: HPAG1_1493

Alternate gene names: 108563918

Gene position: 1554972-1554046 (Counterclockwise)

Preceding gene: 108563919

Following gene: 108563917

Centisome position: 97.41

GC content: 38.94

Gene sequence:

>927_bases
ATGCCGCAAAACCAGCTCATGATCACCATCATTGATGAATCAGGCTCTAAACAGCTCAAATTTTCTAAAAATTTAAAACG
CAACCTCATCATTTCTGTTATCATTCTTTTATTGATCGTGGGGCTTGGCGTAGGGTTTTTAAAATTTTTAATCGCTAAAA
TGGATACGATGACAAGCGAGAGGAATGCGGTTTTAAGGGATTTTAGGGATTTGTATCAAAAAAATTACACTTTGACAAAA
GAGATTAAAAACAAGCGAGAAGAGCTTTTTATTGTGGGGCAAAAGATTCGCGGGTTGGAATCCTTGATTGAAATCAAAAG
AGGGGCTAATGGGGGCGTGCATCTTTATGATGAAGTGGATTTAGAAAATTTGAGCTTAAATCAAAAACATTTAGTGCTCA
TGCTCATTCCTAATGGCATGCCCCTGAAAACTTATAGCGCTATCAAACCCACCAAAGAAAGGAACCACCCCATTAAAAAG
ATTAAGGGCGTTGAATCCGGGATTGATTTTATCGCGCCATTAAACACGCCTGTTTATGCGAGCGCTGATGGGATTGTGGA
TTTTGTGAAAACCAATTCTAATGTGGGGTATGGGAACTTGGTGCGCATTGAGCATGCGTTTGGTTTTAGCTCCATTTACA
CGCATTTAGATCATGTCAATGTGCAACCCAAAAGTTTTATCCAAAAAGGGCAGTTGATTGGCTATAGCGGGAAGAGCGGT
AATAGCGGCGGTGAAAAATTGCATTATGAAGTGCGCTTTTTGGGTAAAATTTTAGACGCAGAAAAATTTCTGGCATGGGA
TTTGGATCATTTCCAAAGCGCTTTAGAAGAAAATAAATTCATTGAATGGAAGAATTTGTTTTGGGTTTTAGAAGACATTG
TCCAGCTCCAAGAGCATGTAGATAAAGATGCGCTCATAAACCAGTAA

Upstream 100 bases:

>100_bases
CTTTGTTTGAAGATTTGGAAGAAAATGAAAATTATTTGGTGTATGGCTCATTTCTAGTGGCCAACGCTTTTTACGGACGC
TATCAAAAGAAGAGGGATTG

Downstream 100 bases:

>100_bases
GGATTTTAGTGTTTTTAGACAGGCGTTTGATTGTGATGGTTACGGACTCTAAAGGGAGCCGTTATATTAATGTTCATATC
TTATTCCGTCAAATTGGCTT

Product: toxR-activated gene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MPQNQLMITIIDESGSKQLKFSKNLKRNLIISVIILLLIVGLGVGFLKFLIAKMDTMTSERNAVLRDFRDLYQKNYTLTK
EIKNKREELFIVGQKIRGLESLIEIKRGANGGVHLYDEVDLENLSLNQKHLVLMLIPNGMPLKTYSAIKPTKERNHPIKK
IKGVESGIDFIAPLNTPVYASADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFIQKGQLIGYSGKSG
NSGGEKLHYEVRFLGKILDAEKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHVDKDALINQ

Sequences:

>Translated_308_residues
MPQNQLMITIIDESGSKQLKFSKNLKRNLIISVIILLLIVGLGVGFLKFLIAKMDTMTSERNAVLRDFRDLYQKNYTLTK
EIKNKREELFIVGQKIRGLESLIEIKRGANGGVHLYDEVDLENLSLNQKHLVLMLIPNGMPLKTYSAIKPTKERNHPIKK
IKGVESGIDFIAPLNTPVYASADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFIQKGQLIGYSGKSG
NSGGEKLHYEVRFLGKILDAEKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHVDKDALINQ
>Mature_307_residues
PQNQLMITIIDESGSKQLKFSKNLKRNLIISVIILLLIVGLGVGFLKFLIAKMDTMTSERNAVLRDFRDLYQKNYTLTKE
IKNKREELFIVGQKIRGLESLIEIKRGANGGVHLYDEVDLENLSLNQKHLVLMLIPNGMPLKTYSAIKPTKERNHPIKKI
KGVESGIDFIAPLNTPVYASADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFIQKGQLIGYSGKSGN
SGGEKLHYEVRFLGKILDAEKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHVDKDALINQ

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=119, Percent_Identity=31.9327731092437, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082174, Length=108, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35010; Mature: 34879

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQNQLMITIIDESGSKQLKFSKNLKRNLIISVIILLLIVGLGVGFLKFLIAKMDTMTSE
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNAVLRDFRDLYQKNYTLTKEIKNKREELFIVGQKIRGLESLIEIKRGANGGVHLYDEVD
HHHHHHHHHHHHHCCCEEHHHHHCCHHHEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECC
LENLSLNQKHLVLMLIPNGMPLKTYSAIKPTKERNHPIKKIKGVESGIDFIAPLNTPVYA
CCCCCCCCCEEEEEECCCCCCCCCHHCCCCCHHCCCCHHHHHHHHCCCCEEECCCCCCEE
SADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFIQKGQLIGYSGKSG
CCCCCEEEEECCCCCCCCCEEEEEHHCCHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCC
NSGGEKLHYEVRFLGKILDAEKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHV
CCCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
DKDALINQ
CHHHCCCC
>Mature Secondary Structure 
PQNQLMITIIDESGSKQLKFSKNLKRNLIISVIILLLIVGLGVGFLKFLIAKMDTMTSE
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNAVLRDFRDLYQKNYTLTKEIKNKREELFIVGQKIRGLESLIEIKRGANGGVHLYDEVD
HHHHHHHHHHHHHCCCEEHHHHHCCHHHEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECC
LENLSLNQKHLVLMLIPNGMPLKTYSAIKPTKERNHPIKKIKGVESGIDFIAPLNTPVYA
CCCCCCCCCEEEEEECCCCCCCCCHHCCCCCHHCCCCHHHHHHHHCCCCEEECCCCCCEE
SADGIVDFVKTNSNVGYGNLVRIEHAFGFSSIYTHLDHVNVQPKSFIQKGQLIGYSGKSG
CCCCCEEEEECCCCCCCCCEEEEEHHCCHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCC
NSGGEKLHYEVRFLGKILDAEKFLAWDLDHFQSALEENKFIEWKNLFWVLEDIVQLQEHV
CCCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
DKDALINQ
CHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]