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The map label for this gene is yebA [C]

Identifier: 108563917

GI number: 108563917

Start: 1553102

End: 1554037

Strand: Reverse

Name: yebA [C]

Synonym: HPAG1_1492

Alternate gene names: 108563917

Gene position: 1554037-1553102 (Counterclockwise)

Preceding gene: 108563918

Following gene: 108563916

Centisome position: 97.35

GC content: 40.92

Gene sequence:

>936_bases
GTGTTTTTAGACAGGCGTTTGATTGTGATGGTTACGGACTCTAAAGGGAGCCGTTATATTAATGTTCATATCTTATTCCG
TCAAATTGGCTTGTATGCGCTTTTGAGCGTTGTGGGATCTTTATTGTTTTTAGGCATTTCGCTACTGGTTTTAAATCAAG
AGATTAAAAACATTGACAAGCAGCATGCTTTAATCACTAAAGAATTTGAGAAAAAAAAAGAGACGAATGAAAAACTTTCT
TCGCAAATGGATGAATTTTTAGACGATTTGCAACTTTCAGGGGAGCGCATCAACGATTTAGAAGAAGTGGTGGGAGTGAA
TAGGCCTGAAGAAAAAGAAGAGAGCAATTTTTCCAGCCGCCTGGATGTCGCTGGGATTACCGGGCTTCAAAAAAGTTTTA
TCATGCGCCTTATCCCTAATGACTACCCGCTAGAATCCTATCGGCGCGTTTCAGCCGCCTTTAATAAAAGAATCCACCCT
ATTTTGCATGTGCTGCACAACCATACCGGGCTTGATTTAAGCACCGCTATCAACACCCCTGTGTATGCGAGCGCGAGCGG
GGTAGTGGGGTTAGCGAGCAAAGGGTGGAATGGGGGGTATGGGAATTTGATTAAAGTTTTCCACCCTTTTGGTTTTAAAA
CCTACTACGCCCATTTGAATAAAATCGTCGTAAAAACGGGCGAATTTGTCAAAAAAGGGCAGTTGATTGGGTATAGTGGT
AACACAGGAATGAGCACAGGGCCGCATTTGCATTATGAAGTGCGGTTTTTAAATCAGCCTATAAACCCCATGAGTTTCAC
CAAATGGAACATGAAAAATTTTGAAGAAGTTTTCAATAAAGAAAGGAGCATCAGATGGCAATCTTTGATAACAATAATAA
ATCGGTTAATGCAAAAACAGGACCAGCGACTATCATCGCTCAAGGCACAAAAATAA

Upstream 100 bases:

>100_bases
AATTCATTGAATGGAAGAATTTGTTTTGGGTTTTAGAAGACATTGTCCAGCTCCAAGAGCATGTAGATAAAGATGCGCTC
ATAAACCAGTAAGGATTTTA

Downstream 100 bases:

>100_bases
AGGGGGAGCTTCATTTGGATTACCATTTGCACGTAGATGGCGAATTAGAGGGGGTGGTGCATTCTAAAAGCACGGTGGTG
ATCGGGCAAACCGGCTCGGT

Product: toxR-activated gene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDKQHALITKEFEKKKETNEKLS
SQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEESNFSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHP
ILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYSG
NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINRLMQKQDQRLSSLKAQK

Sequences:

>Translated_311_residues
MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDKQHALITKEFEKKKETNEKLS
SQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEESNFSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHP
ILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYSG
NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINRLMQKQDQRLSSLKAQK
>Mature_311_residues
MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDKQHALITKEFEKKKETNEKLS
SQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEESNFSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHP
ILHVLHNHTGLDLSTAINTPVYASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYSG
NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINRLMQKQDQRLSSLKAQK

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=140, Percent_Identity=39.2857142857143, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35502; Mature: 35502

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDK
CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHALITKEFEKKKETNEKLSSQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEESNFSSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCHHHH
LDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHPILHVLHNHTGLDLSTAINTP
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
VYASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYSG
CEECCCCCEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEECC
NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINRLMQKQ
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQRLSSLKAQK
HHHHHHHCCCC
>Mature Secondary Structure
MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNQEIKNIDK
CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHALITKEFEKKKETNEKLSSQMDEFLDDLQLSGERINDLEEVVGVNRPEEKEESNFSSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHCCHHHH
LDVAGITGLQKSFIMRLIPNDYPLESYRRVSAAFNKRIHPILHVLHNHTGLDLSTAINTP
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
VYASASGVVGLASKGWNGGYGNLIKVFHPFGFKTYYAHLNKIVVKTGEFVKKGQLIGYSG
CEECCCCCEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCEEEEECC
NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKNFEEVFNKERSIRWQSLITIINRLMQKQ
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQRLSSLKAQK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]