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The map label for this gene is recN [H]

Identifier: 108563902

GI number: 108563902

Start: 1538719

End: 1540293

Strand: Direct

Name: recN [H]

Synonym: HPAG1_1477

Alternate gene names: 108563902

Gene position: 1538719-1540293 (Clockwise)

Preceding gene: 108563901

Following gene: 108563903

Centisome position: 96.39

GC content: 39.24

Gene sequence:

>1575_bases
ATGCGAGATTTTAATAACGCTCAAATCACACGCTTAAAAGTGCGTCAAAACGCTGTTTTTGAAAAATTGGATTTGGAGTT
TAAAGACGGCTTGAGCGCGATTAGTGGGGCTAGTGGCGTGGGAAAAAGCGTTCTGATTGCGAGCCTTTTAGGGGCGTTTG
GGCTTAAAGAGAGCAACGCTTCAAACATTGAAGTGGAATTGATCGCGCCTTTTTTAGACACTGAAGAATACGGCATTTTT
AGAGAAGATGAACATGAACCCTTAATCATCAGCGTGATTAAAAAAGAAAAAACGCGCTATTTTTTAAACCAAACAAGCCT
GTCTAAAAACACGCTCAAAGCGTTATTAAAAGGTTTGATCAAACGCCTATCTAACGACAGATTCAGCCAGAATGAACTCA
ATGATATTTTAATGCTCTCCTTATTAGATGGCTATATCCAAAACAAAAACAAGGCGTTTAGCCCCCTTTTAGGTGCGCTT
GAAGAAAAATTCACTCATTTAGAAAAGCTAGAAAAAGAAAGGCGGTTATTAGAGGATAAAAAGCGTTTCCAAAAGGATTT
AGAAGAACGATTGAATTTTGAAAAAATGAAATTAGAGAGGCTGGATTTAAAAGAAGATGAATACGAACGCCTTTTAGAGC
AAAAAAAATTGCTTTCTAGTAAGGAAAAACTGAACGATAAAATCGCTCTGGCGTTAGAGGTGCTAGAAAATACCCACAAA
ATCACGCATGCTCTAGAGAGCGTGGGCCATAGCGCGGAGTTTTTAAAAAGCGCTTTATTAGAAGCGAACGCTCTACTAGA
AAAAGAGCAGGCTAAATTAGAAGAGTGCGAGCGTTTGGATATTGAAAAAGTGCTAGAAAGGCTTGGCATGCTAAGCGGGA
TCATTAAGGATTACGGGAGCATTATGCATGCTAAAGAACGATTAGGGCATGTTAAAAACGAATTGCATAACCTAAAAGAA
ATTGACCATCATTGCGAAACTTACCACAAAGAAATAGAGCAACTAAAAACCGAATGCTTGAAATTGTGCGAAGAAATAAG
CGGCTTTAGAAAAGAATATTTAGCCGGTTTTAACGCTCTTTTAAGCGCTAAAGCGAAAGATTTGCTCCTAAAAAGCCCTA
GTTTGGTTTTAGAAGAAGCCCCCATGAGCGAAAAAGGCGCTCAAAAACTCGTTTTGAATTTACAAAATTCCCAATTAGAA
ACCTTAAGCTCTGGAGAATACAGCCGTTTGAGGTTAGCGTTCATGCTTTTAGAAATGGAGTTTTTAAAGGATTTTAAAGG
CGTGTTGGTGTTAGATGAAATGGATTCCAACCTGAGCGGTGAAGAGAGTTTAGCGGTCTCTAAAGCCCTTGAAACCTTGA
GTAGCCATTCGCAAATCTTTGCCATTTCGCACCAAGTCCATATCCCAGCGCTCGCTAAAAACCATATTTTAGTCTTCAAA
GAAAACCACAAAAGCCTTGCAAAAACCCTTAATAACGAAGAAAGGGTTTTAGAAATCGCGCGCATGATAGGGGGGAGCGA
GAATATAGAGAGCGCGATTTCTTTCGCTAAGGAAAAATTAAAGGCGCAAGAATGA

Upstream 100 bases:

>100_bases
CAAGCTCTTACAAAAAAATTCAAGGGATTATTTTAAAGTGCTTAAAGAAAAGCTCTTATGGGGGGAAAGCCCTAGCAAAA
AAAGATAAAAAGGGTAAAAC

Downstream 100 bases:

>100_bases
AATTTTTTCTTTTAAAGAAATTCAGCGAATTTTTAAACGCTCAAACGCATTTTAGCCTCAAACGCTTGAACGCGTCTAGC
TTTTTATTAGAGACTTTTTT

Product: DNA repair protein

Products: NA

Alternate protein names: Recombination protein N [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNASNIEVELIAPFLDTEEYGIF
REDEHEPLIISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLGAL
EEKFTHLEKLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHK
ITHALESVGHSAEFLKSALLEANALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGSIMHAKERLGHVKNELHNLKE
IDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNALLSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLNLQNSQLE
TLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFK
ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE

Sequences:

>Translated_524_residues
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNASNIEVELIAPFLDTEEYGIF
REDEHEPLIISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLGAL
EEKFTHLEKLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHK
ITHALESVGHSAEFLKSALLEANALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGSIMHAKERLGHVKNELHNLKE
IDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNALLSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLNLQNSQLE
TLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFK
ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE
>Mature_524_residues
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNASNIEVELIAPFLDTEEYGIF
REDEHEPLIISVIKKEKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLGAL
EEKFTHLEKLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHK
ITHALESVGHSAEFLKSALLEANALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGSIMHAKERLGHVKNELHNLKE
IDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNALLSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLNLQNSQLE
TLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFK
ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE

Specific function: May be involved in recombinational repair of damaged DNA [H]

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family [H]

Homologues:

Organism=Escherichia coli, GI48994901, Length=577, Percent_Identity=23.3968804159445, Blast_Score=92, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 59623; Mature: 59623

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNA
CCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
SNIEVELIAPFLDTEEYGIFREDEHEPLIISVIKKEKTRYFLNQTSLSKNTLKALLKGLI
CCEEEEEEECHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLGALEEKFTHLEKLEKERRLLEDK
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHK
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHALESVGHSAEFLKSALLEANALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IMHAKERLGHVKNELHNLKEIDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLNLQNSQLETLSSGEYSRLRLAFMLLEME
HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHH
FLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFK
HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCCEEEEE
ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE
CCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDFNNAQITRLKVRQNAVFEKLDLEFKDGLSAISGASGVGKSVLIASLLGAFGLKESNA
CCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
SNIEVELIAPFLDTEEYGIFREDEHEPLIISVIKKEKTRYFLNQTSLSKNTLKALLKGLI
CCEEEEEEECHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLGALEEKFTHLEKLEKERRLLEDK
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIALALEVLENTHK
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITHALESVGHSAEFLKSALLEANALLEKEQAKLEECERLDIEKVLERLGMLSGIIKDYGS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IMHAKERLGHVKNELHNLKEIDHHCETYHKEIEQLKTECLKLCEEISGFRKEYLAGFNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLNLQNSQLETLSSGEYSRLRLAFMLLEME
HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHH
FLKDFKGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPALAKNHILVFK
HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCCEEEEE
ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLKAQE
CCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]