| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is fecA [H]
Identifier: 108563894
GI number: 108563894
Start: 1528454
End: 1530982
Strand: Reverse
Name: fecA [H]
Synonym: HPAG1_1469
Alternate gene names: 108563894
Gene position: 1530982-1528454 (Counterclockwise)
Preceding gene: 108563895
Following gene: 108563890
Centisome position: 95.9
GC content: 46.07
Gene sequence:
>2529_bases GTGTTGCATAAAAAAGTTCTGTTAGTTTTAACTGCCAGTTTGATTTGCCAAGAGTCTTTGTTCGCTAAGGAAAAAGACTA CACTTTGGGCAAGGTTTCTACTGCCGGGAAAAAGGATAAATCTGACTATTCTGGGCAGGTCAATTTGGGTTATAGCGGGA TTACCGCGCCTAAGAGTTGGCAAGATGAAGAAGTGAAAAAATACACAGGAAGCCGCACGGTGATCTCTAATAAAGCGCTC ACCCAACAAGCTAACCAAAGCATTGAAGAAGCTTTACAGAATGTCCCCGGTCTGCAAATTAGGAATGCGACAGGTGTAGG GGCTATGCCCACTATCCAAATCCGTGGCTTTGGAGCTGGGGGTTCAGGGCATAGCGATGCGACGCTGATGTTAGTTAATG GTATTCCTGTTTATATGGCCCCCTACGCTCACATTGAGCTAGACATTTTCCCTGTTACCTTTCAAGCCATTGATCGCATT GATGTGATTAAAGGTGGAGGCAGCGTGCAATATGGGCCTAACACTTATGGGGGTATTGTCAATATCATCACTAAGCCTAT CCCTACTCAATGGGAAAACCAAGCGGCTGAAAGGATCACTTATTGGGCTAAGGCTAGAAACGCTGGGTTTGCCGCTCCCC CTGATAAAACCGGTGATCCTTCTTTCATCAAGTCTTTAGGCAACAACCTCCTCTATAACACTTATGTGAGGAGCGGAGGG ATGATCAATAAGCATGTGGGTATCCAAGCGCAAGCTAACTGGGTTAGAGGACAAGGCTTTAGGGACAATAGCCCTTCTAA TATTTCAAACTATTGGCTGGATGGGATCTATGACATCAATGAAAGCAATGGGATTAAAGCCTATTACCAGTACTACGATT TTGCTATCGCTCAACCGGGATCACTCAGCGAGCAAGATTATAAAATAAACCGCTTCGCTAATTTACGCCCCTTAAACCAA AAAGGCGGGCGTTCACAACGCTTTGGGGCTGTGTATGAAAACCGCTTCGGGGATTTAGACAGAGTGGGCGGAACTTTTAG CTTCACTTACTATGGGCAGTTGATGACTAGGGACTTTCAAGTGAGCTCTAGCTACAATAGCGCTAACATGGTTACTTGTT TTAGCGAAGCGGCATGCAGGGCGGCGGGACTTCCGGCAGGGTATAACTTGGCTGTGCCTTATTATGCCACCAACTACAAT GGTTGGGCAGAAGTAGAAAACCCTGTGCGTTCCATTAACAACGCTTTTGAGCCTAAAGTGAATCTGATCGTCAATACCGG GAAAATCAAGCAAACCTTTATCATGGGCTTGCGTTTCATGACCACCACTTTTTTACAACGCCAATACTTAAACACCAATG AATGCACCACCAAAACGAGCGGTGAGGGGGCAGGATTCTTGTGTGAGGGCGCTAATGTGATGAGCGGTTGGAAACCCCAC ATCAAGCATGGCGTTTATAGAAACTGGAATAACTGGCGTAACAATTACACGGCAGTTTATTTGAGCGATCGCATTGAAGC TTGGGACGGGCGCTTTTTCATCGTGCCTGGTTTGCGCTACGCTTTTGTGCAATACAACAACGAAAATGCGGCTAATTGGG CGCAAATCCCTGAAAAGGATTTGAGAAAAATCAAGCACATGAACAATTGGATGCCCTCAACCAACATTGGCTTTATCCCC GTGCAAGGCGATCACAATGTGCTTACCTACTTCAACTACCAACGCTCTTTCGTCCCGCCTCAATTAGACGTTTTGAGCTA TGGAGGAGCGGAGTATTTCACCCAGCACTTTGACACGGTGGAAGCAGGAGCGCGCTACACCTATAAAGATAAATTCAGCT TCAATGCGGACTACTTCAGGATTTGGGCGCGCGATTTTGCCACCGGGCAGTATTCAGTCTATACAAGCGGTCCCATGAAG GGTAATGTGCGCCCCATTAACGGCTATTCTCAAGGCGTGGAGCTGGAATTGTATTACAGGCCTATTAGAGGGCTGCAATT CCATGCCGCTTTCAACTACATTGACACTCGTGTAACCAGCCATGGCCCTTTAACAGACTTGAACGGGGATGTGCTAAAAG GGACTAGCTATAACAAGCATTTCCCTTTTGTAAGCCCTTTCCAGTTCATTCTTGACGCTCGTTACAATTGGCGTAAAACC ACCATTGGTATTTCTAGCTATTTTTACAGCCGTGCTTATAGCGGGATTAGCAACAGCGCGGCAGGAGGTTATTATGGGAT GCAATATTATAGTGGGGGGAACAACTATGAAAGCGTTCTTAATAGCGGTTATCAATGCGAAGCTTGGTGTATGACCCAAC ATGAAGGGCTCTTGCCTTGGTATTGGGTGTGGAATATCCAAGTGAGCCAAATTTTCTGGGAAAACGGACGACACAGAGTT ACAGGAAGCTTGCAAATCAATAACATCTTCAACATGAAGTATTATTTTACAGGGATTGGCTCTAGCCCTGCAGGCTTGCA ACCCGCGCCTGGAAGATCGGTTACAGCGTATTTAAACTACACTTTCTAA
Upstream 100 bases:
>100_bases AGTTTTTTTTGTTTTTATTACTTAATAGGCGTTCGTTATTGGTGTGATTTTACTTGAAAAATTTAAACTATTTTTTAATC TCTCAAAACATAAGGAGTTT
Downstream 100 bases:
>100_bases AGGCTTTTAAAAGGAGAGGGGTTATTGCGCTATGATGAGCCGCTCAAATTAGCCGTTTAGCGGTTTCACTAATTTCACTA ATATTGTGGAGCATTCATTT
Product: iron(III) dicitrate transport protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 842; Mature: 842
Protein sequence:
>842_residues MLHKKVLLVLTASLICQESLFAKEKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKAL TQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRI DVIKGGGSVQYGPNTYGGIVNIITKPIPTQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGG MINKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGIYDINESNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQ KGGRSQRFGAVYENRFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACRAAGLPAGYNLAVPYYATNYN GWAEVENPVRSINNAFEPKVNLIVNTGKIKQTFIMGLRFMTTTFLQRQYLNTNECTTKTSGEGAGFLCEGANVMSGWKPH IKHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWAQIPEKDLRKIKHMNNWMPSTNIGFIP VQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMK GNVRPINGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFILDARYNWRKT TIGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRV TGSLQINNIFNMKYYFTGIGSSPAGLQPAPGRSVTAYLNYTF
Sequences:
>Translated_842_residues MLHKKVLLVLTASLICQESLFAKEKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKAL TQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRI DVIKGGGSVQYGPNTYGGIVNIITKPIPTQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGG MINKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGIYDINESNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQ KGGRSQRFGAVYENRFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACRAAGLPAGYNLAVPYYATNYN GWAEVENPVRSINNAFEPKVNLIVNTGKIKQTFIMGLRFMTTTFLQRQYLNTNECTTKTSGEGAGFLCEGANVMSGWKPH IKHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWAQIPEKDLRKIKHMNNWMPSTNIGFIP VQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMK GNVRPINGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFILDARYNWRKT TIGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRV TGSLQINNIFNMKYYFTGIGSSPAGLQPAPGRSVTAYLNYTF >Mature_842_residues MLHKKVLLVLTASLICQESLFAKEKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKAL TQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRI DVIKGGGSVQYGPNTYGGIVNIITKPIPTQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGG MINKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGIYDINESNGIKAYYQYYDFAIAQPGSLSEQDYKINRFANLRPLNQ KGGRSQRFGAVYENRFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACRAAGLPAGYNLAVPYYATNYN GWAEVENPVRSINNAFEPKVNLIVNTGKIKQTFIMGLRFMTTTFLQRQYLNTNECTTKTSGEGAGFLCEGANVMSGWKPH IKHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWAQIPEKDLRKIKHMNNWMPSTNIGFIP VQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTVEAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMK GNVRPINGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFILDARYNWRKT TIGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHRV TGSLQINNIFNMKYYFTGIGSSPAGLQPAPGRSVTAYLNYTF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=266, Percent_Identity=27.0676691729323, Blast_Score=115, Evalue=2e-26, Organism=Escherichia coli, GI1788478, Length=132, Percent_Identity=32.5757575757576, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94798; Mature: 94798
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHKKVLLVLTASLICQESLFAKEKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSW CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCC QDEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAG CHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCC GSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIV CCCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHH NIITKPIPTQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGG EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCC MINKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGIYDINESNGIKAYYQYYDFAIAQPG EEEEEECCEEECCEEECCCCCCCCCCCCHHHCCCCEEEECCCCCCEEEEEEEEEEEECCC SLSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDRVGGTFSFTYYGQLMTRDFQ CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEE VSSSYNSANMVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKV EECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCCE NLIVNTGKIKQTFIMGLRFMTTTFLQRQYLNTNECTTKTSGEGAGFLCEGANVMSGWKPH EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHH IKHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWAQIPEKD HHCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCCHHCCCHHH LRKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTV HHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHH EAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPINGYSQGVELELYYR HCCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEE PIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFILDARYNWRKT CCCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEE TIGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPW EEEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEE YWVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPAPGRSVTAYLNY EEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE TF CC >Mature Secondary Structure MLHKKVLLVLTASLICQESLFAKEKDYTLGKVSTAGKKDKSDYSGQVNLGYSGITAPKSW CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCC QDEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAG CHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCC GSGHSDATLMLVNGIPVYMAPYAHIELDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIV CCCCCCEEEEEEECCCEEECCEEEEEEEEEEEEHHHHCCEEEEECCCCEEECCCCCCCHH NIITKPIPTQWENQAAERITYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRSGG EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCC MINKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGIYDINESNGIKAYYQYYDFAIAQPG EEEEEECCEEECCEEECCCCCCCCCCCCHHHCCCCEEEECCCCCCEEEEEEEEEEEECCC SLSEQDYKINRFANLRPLNQKGGRSQRFGAVYENRFGDLDRVGGTFSFTYYGQLMTRDFQ CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEE VSSSYNSANMVTCFSEAACRAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKV EECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCCE NLIVNTGKIKQTFIMGLRFMTTTFLQRQYLNTNECTTKTSGEGAGFLCEGANVMSGWKPH EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHH IKHGVYRNWNNWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAANWAQIPEKD HHCCCCCCCCCCCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCCCHHCCCHHH LRKIKHMNNWMPSTNIGFIPVQGDHNVLTYFNYQRSFVPPQLDVLSYGGAEYFTQHFDTV HHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHH EAGARYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPINGYSQGVELELYYR HCCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEE PIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPFQFILDARYNWRKT CCCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCEEE TIGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVLNSGYQCEAWCMTQHEGLLPW EEEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEECCCCCCEE YWVWNIQVSQIFWENGRHRVTGSLQINNIFNMKYYFTGIGSSPAGLQPAPGRSVTAYLNY EEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE TF CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]