Click here to switch to the map view.

The map label for this gene is 108563890

Identifier: 108563890

GI number: 108563890

Start: 1524194

End: 1524604

Strand: Reverse

Name: 108563890

Synonym: HPAG1_1465

Alternate gene names: NA

Gene position: 1524604-1524194 (Counterclockwise)

Preceding gene: 108563894

Following gene: 108563889

Centisome position: 95.5

GC content: 42.58

Gene sequence:

>411_bases
ATGGCGATCAAAAAAAGCGAATTGTATAGCTCTTTATGGGCTGGGGCGGATAGCTTAAGGGGCGGAATGGATGCGAGCGA
GTATAAAAACTATGTTTTGAACCTGCTTTTTTTAAAATACATCAGCGATAAAGCCAGAAATGATGCCAAAAACAATACTG
ATAGTGCCATAGAAGTGCCACAAGGGTGTTTTTATGAAGACATTCTCGCTTTAGAGGGCGATAAGGAAATAGGCGACAAG
CTCAATAAAATCATCGCCAAGATCGCAGATCGAAACGAATTAGAAGGCGTGATTGACAGCGTGGATTTTAACGATAACAC
CAAGCTAGGCGAGGGTAAAGCGATGATAGACACCCTTTCTAATTTGGTTAAAATCTTTGCGGATTTGAGTTTGGGCGCGC
ATGGGGCTTAG

Upstream 100 bases:

>100_bases
CTTGTTTTTGAACTTCTTTTTCTGTTTTCATCACAAACCCCCTAAGAACGCTTTTTATCGTTTTATATTATAATCCTAAA
AACAAATAGGGCGGTTAAAA

Downstream 100 bases:

>100_bases
ACGATGATTTACTGGGCGATGCATACGAATATTTAATGCGCCATTTCGCTAGCGAGTCCGGTAAATCCAAAGGGCAGTTT
TACACCCCTAGCGAAGTTTC

Product: type I restriction enzyme M protein

Products: NA

Alternate protein names: Type I Restriction M Protein; N-6 DNA Methylase; Type I Restriction- System Specificity Subunit; N-6 DNA Methylase Family; Type I Restriction System Protein; Type I Restriction Chain; Type I Restriction- System Modification Subunit; Type I Restriction- System Methyltransferase Subunit; Type I Restriction- System; Type I Restriction System Methyltransferase Subunit; DNA Restriction- System DNA Methylase; Type I Restriction- Subunit M; Protein Of Type I Restriction-Modification System

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARNDAKNNTDSAIEVPQGCFYEDILALEGDKEIGDK
LNKIIAKIADRNELEGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGA

Sequences:

>Translated_136_residues
MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARNDAKNNTDSAIEVPQGCFYEDILALEGDKEIGDK
LNKIIAKIADRNELEGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGA
>Mature_135_residues
AIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARNDAKNNTDSAIEVPQGCFYEDILALEGDKEIGDKL
NKIIAKIADRNELEGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGA

Specific function: Unknown

COG id: COG0286

COG function: function code V; Type I restriction-modification system methyltransferase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14865; Mature: 14734

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARNDAKNNTDSAIEVP
CCCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
QGCFYEDILALEGDKEIGDKLNKIIAKIADRNELEGVIDSVDFNDNTKLGEGKAMIDTLS
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
NLVKIFADLSLGAHGA
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARNDAKNNTDSAIEVP
CCCHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
QGCFYEDILALEGDKEIGDKLNKIIAKIADRNELEGVIDSVDFNDNTKLGEGKAMIDTLS
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
NLVKIFADLSLGAHGA
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA