| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563081
Identifier: 108563081
GI number: 108563081
Start: 686979
End: 687929
Strand: Direct
Name: 108563081
Synonym: HPAG1_0656
Alternate gene names: NA
Gene position: 686979-687929 (Clockwise)
Preceding gene: 108563080
Following gene: 108563082
Centisome position: 43.03
GC content: 28.5
Gene sequence:
>951_bases ATGGCAATAAGATTTGGGGTTATCTTTATCGATAATAATATCGATAATTTTTTTATTTTAGAGCGTAAGAGCGGGCTTGA TTTTATAAGGTTTATTGAAGCTACTGCTTCTTATACTAATTTAGAGCGTAAGAGAAAGCTTAGTTTTGAAGAGTGTGCTG TTTTTTACACTGATGCTGATTTTGTTAGAATAGAAAGAGAAATAACAAGTTTTTTAGTATTTCAAAACGATCGAAGTGTA ACGCTTAACAATGATCCAAGTGCAACATTCAATTTAAAAAACTATTTGTTAGTATTGGCGAAAAAGTTTTATTGTAGTGT TTGTTATTGCGAAAACATAAACACACAAAAAATTGAATGGATTAGCACTAACCATTCGGATTTTGGAGAAATACTGCATG AATTCTCGGACATTACATCCTATGAATTACCACAATTTCTCACAGACTTAAAGGATAAAATAATTGAATTTAATTTTCAT AAGAAAATTATAAATAATAGCTTACCTTTTGGGATTATTTTTATCGTTAGCGACCCTGAAAACCTTATTGATATTAATGA TAAAAACAAAAAGTTAGAATCATGTTTTCATTATTATGAAAATAGTCATTTTCTTTACTTCCCAATTATAACTGAGAGTT ATTTAATTTTAGATAATCTAAAAAGTTATTTCATATTTCAAAATGAGAACGACAAACCATTCAATTTAAAACAACACTTG TTGGAACTCAAAAAGGAATTAGGGTTTGAGCCATCGGGTATTTTCTATTGCGAAAATGCAAGTACACACAAAATTGAATT GATTAGTAATGAGCCTGAGGATTTCAAAGGGGTATTGCTTGAATTTTTACAAATTACATCTTTATCTCCTAATGAATTAC CACAATTTCTTGCAAACTTTAAGTTTTCAAATGGCATGGTTATTCTAAAATTCCACAAGAAAAAAGGATAA
Upstream 100 bases:
>100_bases ATTTGATATTGTAGTTAGTGGCATAGCATAGTATAATGGTTTGACTTAAAAGTTTGAAAAGTGCAGTTTTCATAACTAAA AGAGATTTTAAGGAATAATT
Downstream 100 bases:
>100_bases CTCAAATAAAAAAACAAGTGTCTGAAGAATGTAAAGTAAACCCTTTTTTTCATAGTTGGAGAGTAAGCTCTGAACAAAAC CGCAAAGTCAATAAAATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MAIRFGVIFIDNNIDNFFILERKSGLDFIRFIEATASYTNLERKRKLSFEECAVFYTDADFVRIEREITSFLVFQNDRSV TLNNDPSATFNLKNYLLVLAKKFYCSVCYCENINTQKIEWISTNHSDFGEILHEFSDITSYELPQFLTDLKDKIIEFNFH KKIINNSLPFGIIFIVSDPENLIDINDKNKKLESCFHYYENSHFLYFPIITESYLILDNLKSYFIFQNENDKPFNLKQHL LELKKELGFEPSGIFYCENASTHKIELISNEPEDFKGVLLEFLQITSLSPNELPQFLANFKFSNGMVILKFHKKKG
Sequences:
>Translated_316_residues MAIRFGVIFIDNNIDNFFILERKSGLDFIRFIEATASYTNLERKRKLSFEECAVFYTDADFVRIEREITSFLVFQNDRSV TLNNDPSATFNLKNYLLVLAKKFYCSVCYCENINTQKIEWISTNHSDFGEILHEFSDITSYELPQFLTDLKDKIIEFNFH KKIINNSLPFGIIFIVSDPENLIDINDKNKKLESCFHYYENSHFLYFPIITESYLILDNLKSYFIFQNENDKPFNLKQHL LELKKELGFEPSGIFYCENASTHKIELISNEPEDFKGVLLEFLQITSLSPNELPQFLANFKFSNGMVILKFHKKKG >Mature_315_residues AIRFGVIFIDNNIDNFFILERKSGLDFIRFIEATASYTNLERKRKLSFEECAVFYTDADFVRIEREITSFLVFQNDRSVT LNNDPSATFNLKNYLLVLAKKFYCSVCYCENINTQKIEWISTNHSDFGEILHEFSDITSYELPQFLTDLKDKIIEFNFHK KIINNSLPFGIIFIVSDPENLIDINDKNKKLESCFHYYENSHFLYFPIITESYLILDNLKSYFIFQNENDKPFNLKQHLL ELKKELGFEPSGIFYCENASTHKIELISNEPEDFKGVLLEFLQITSLSPNELPQFLANFKFSNGMVILKFHKKKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37163; Mature: 37032
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRFGVIFIDNNIDNFFILERKSGLDFIRFIEATASYTNLERKRKLSFEECAVFYTDAD CEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCH FVRIEREITSFLVFQNDRSVTLNNDPSATFNLKNYLLVLAKKFYCSVCYCENINTQKIEW HHHHHHHHHEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHEEEEEECCCCCCEEEE ISTNHSDFGEILHEFSDITSYELPQFLTDLKDKIIEFNFHKKIINNSLPFGIIFIVSDPE EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECHHHHHHCCCCCEEEEEEEECCC NLIDINDKNKKLESCFHYYENSHFLYFPIITESYLILDNLKSYFIFQNENDKPFNLKQHL CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCCHHHHH LELKKELGFEPSGIFYCENASTHKIELISNEPEDFKGVLLEFLQITSLSPNELPQFLANF HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC KFSNGMVILKFHKKKG CCCCCEEEEEEECCCC >Mature Secondary Structure AIRFGVIFIDNNIDNFFILERKSGLDFIRFIEATASYTNLERKRKLSFEECAVFYTDAD EEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCH FVRIEREITSFLVFQNDRSVTLNNDPSATFNLKNYLLVLAKKFYCSVCYCENINTQKIEW HHHHHHHHHEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHEEEEEECCCCCCEEEE ISTNHSDFGEILHEFSDITSYELPQFLTDLKDKIIEFNFHKKIINNSLPFGIIFIVSDPE EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECHHHHHHCCCCCEEEEEEEECCC NLIDINDKNKKLESCFHYYENSHFLYFPIITESYLILDNLKSYFIFQNENDKPFNLKQHL CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCEEEEEECCCCCCCCHHHHH LELKKELGFEPSGIFYCENASTHKIELISNEPEDFKGVLLEFLQITSLSPNELPQFLANF HHHHHHCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC KFSNGMVILKFHKKKG CCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA