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The map label for this gene is ybdL [C]

Identifier: 108563080

GI number: 108563080

Start: 685670

End: 686842

Strand: Direct

Name: ybdL [C]

Synonym: HPAG1_0655

Alternate gene names: 108563080

Gene position: 685670-686842 (Clockwise)

Preceding gene: 108563079

Following gene: 108563081

Centisome position: 42.95

GC content: 42.63

Gene sequence:

>1173_bases
ATGTTATATTCCTCTAAAATCCAATCCCTTTCAGAATCCACAACGATCGCTATCAGCACGCTCGCTAAAGAATTGAAATC
GCAAGGAAAAGATATTTTAAGTTTTTCAGCGGGCGAGCCTGATTTTGACACCCCACAAGCGATTAAAGATGCGGCTATAA
AAGCCCTAAATGACGGCTTCACCAAATACACGCCAGTGGCTGGTATCCCTGAATTATTAAAAGCGATCGCTTTTAAATTG
AAAAAAGAAAACAGCTTGGATTATGAACCGAATGAAATTCTAGTGAGCAACGGTGCTAAGCAGAGCTTGTTCAATGCGAT
TCAAGCTTTAATAGGGGAGGGTGATGAAGTGATTATCCCTGTGCCTTTTTGGGTAACTTACCCTGAGCTTGTGAAATACA
GCAATGGGGTGAGTAAATTCATTCAAACCGATGAAAAAAGCCGCTTTAAAATCACCCCCAAGCAGCTTAAAAACGCCTTA
AGCCCCAAAACAAAAATGCTCATTCTCACCACCCCATCAAACCCTACCGGCATGCTTTATAGTAAGGCGGAATTAGAGGC
TTTGGGCGAAGTTTTAAAAGACACCAAAATTTGGGTGCTTAGCGATGAAATTTATGAAAAGCTTGTTTATAAGGGGGAGT
TTGTTTCTTGCGCGGCGGTGAGTGAAGAGATGAAAAAACGCACCATTACCATTAATGGCTTGAGCAAGTCAGTAGCGATG
ACAGGCTGGCGTATGGGCTATGCGGCGAGCAAGGATAAAAAATTAGTCAAATTGATGAATAACTTGCAAAGCCAATGCAC
TTCCAATATCAATTCTATCACACAAATGGCTTCTATTGTGGCGCTTGAGGGGTTGGTGGATAAGGAAATTGAAACGATGC
GTCAGGCTTTTGAGAAGCGCTGTGATTTAGCCCACGCAAAAATCAATGCGATTAAAGGGTTGAATGCTTTAAAACCTGAT
GGGGCGTTTTATCTGTTTATCAACATTGGCAGTCTTTGTGGGGGAGATTCGATGCGATTTTGCCATGAGCTATTGGAAAA
AGAAGGCGTGGCGTTAGTGCCTGGAAAGGCTTTTGGATTGGAAGGCTATGTCCGTTTGTCTTTTGCATGCTCAGAAGAGC
AGATTGAAAAGGGGATTGAACGCATCGCTCGCTTTGTCAAATCAAAGGGGTAA

Upstream 100 bases:

>100_bases
ACCGCTTTCTTTTGAAACATTTTTAAAAGTTTTTTGAAAATTAGAATTAAAATCTTTTTGATCATGTTATGATAGTTCAA
AAAATTAACAAGGATTAAGC

Downstream 100 bases:

>100_bases
AAGAATTTTTAAAGGGGGATTTTAATCTTGTTTGGAATTTGATATTGTAGTTAGTGGCATAGCATAGTATAATGGTTTGA
CTTAAAAGTTTGAAAAGTGC

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MLYSSKIQSLSESTTIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKL
KKENSLDYEPNEILVSNGAKQSLFNAIQALIGEGDEVIIPVPFWVTYPELVKYSNGVSKFIQTDEKSRFKITPKQLKNAL
SPKTKMLILTTPSNPTGMLYSKAELEALGEVLKDTKIWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITINGLSKSVAM
TGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEKRCDLAHAKINAIKGLNALKPD
GAFYLFINIGSLCGGDSMRFCHELLEKEGVALVPGKAFGLEGYVRLSFACSEEQIEKGIERIARFVKSKG

Sequences:

>Translated_390_residues
MLYSSKIQSLSESTTIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKL
KKENSLDYEPNEILVSNGAKQSLFNAIQALIGEGDEVIIPVPFWVTYPELVKYSNGVSKFIQTDEKSRFKITPKQLKNAL
SPKTKMLILTTPSNPTGMLYSKAELEALGEVLKDTKIWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITINGLSKSVAM
TGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEKRCDLAHAKINAIKGLNALKPD
GAFYLFINIGSLCGGDSMRFCHELLEKEGVALVPGKAFGLEGYVRLSFACSEEQIEKGIERIARFVKSKG
>Mature_390_residues
MLYSSKIQSLSESTTIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGFTKYTPVAGIPELLKAIAFKL
KKENSLDYEPNEILVSNGAKQSLFNAIQALIGEGDEVIIPVPFWVTYPELVKYSNGVSKFIQTDEKSRFKITPKQLKNAL
SPKTKMLILTTPSNPTGMLYSKAELEALGEVLKDTKIWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITINGLSKSVAM
TGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEKRCDLAHAKINAIKGLNALKPD
GAFYLFINIGSLCGGDSMRFCHELLEKEGVALVPGKAFGLEGYVRLSFACSEEQIEKGIERIARFVKSKG

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=414, Percent_Identity=28.2608695652174, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI56713256, Length=416, Percent_Identity=28.125, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI95147551, Length=422, Percent_Identity=25.5924170616114, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI169881279, Length=422, Percent_Identity=25.5924170616114, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI4507369, Length=412, Percent_Identity=24.0291262135922, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI169881281, Length=304, Percent_Identity=24.3421052631579, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI4885351, Length=320, Percent_Identity=22.8125, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI215599424, Length=351, Percent_Identity=22.2222222222222, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI19263340, Length=351, Percent_Identity=22.2222222222222, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI7705897, Length=361, Percent_Identity=24.9307479224377, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI33469970, Length=361, Percent_Identity=24.9307479224377, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1786816, Length=392, Percent_Identity=25.765306122449, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1788627, Length=397, Percent_Identity=28.2115869017632, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1788722, Length=400, Percent_Identity=25.5, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17567663, Length=372, Percent_Identity=25.2688172043011, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71994476, Length=380, Percent_Identity=28.4210526315789, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71994472, Length=380, Percent_Identity=28.4210526315789, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17567369, Length=409, Percent_Identity=25.4278728606357, Blast_Score=107, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6322401, Length=388, Percent_Identity=23.9690721649485, Blast_Score=133, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6323118, Length=356, Percent_Identity=22.752808988764, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18859735, Length=400, Percent_Identity=24.25, Blast_Score=118, Evalue=7e-27,
Organism=Drosophila melanogaster, GI28573069, Length=394, Percent_Identity=26.3959390862944, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24646114, Length=394, Percent_Identity=26.3959390862944, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28573067, Length=394, Percent_Identity=26.3959390862944, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28573065, Length=394, Percent_Identity=26.3959390862944, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45551451, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641770, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641760, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641768, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641766, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24641764, Length=370, Percent_Identity=24.8648648648649, Blast_Score=82, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42914; Mature: 42914

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYSSKIQSLSESTTIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGF
CCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
TKYTPVAGIPELLKAIAFKLKKENSLDYEPNEILVSNGAKQSLFNAIQALIGEGDEVIIP
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
VPFWVTYPELVKYSNGVSKFIQTDEKSRFKITPKQLKNALSPKTKMLILTTPSNPTGMLY
CCHHHCCHHHHHHCCHHHHHHHCCCCCCEEECHHHHHHHCCCCCEEEEEECCCCCCCCEE
SKAELEALGEVLKDTKIWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITINGLSKSVAM
CHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCHHHHH
TGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEKR
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CDLAHAKINAIKGLNALKPDGAFYLFINIGSLCGGDSMRFCHELLEKEGVALVPGKAFGL
HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCCCCC
EGYVRLSFACSEEQIEKGIERIARFVKSKG
CCEEEEEEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYSSKIQSLSESTTIAISTLAKELKSQGKDILSFSAGEPDFDTPQAIKDAAIKALNDGF
CCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
TKYTPVAGIPELLKAIAFKLKKENSLDYEPNEILVSNGAKQSLFNAIQALIGEGDEVIIP
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
VPFWVTYPELVKYSNGVSKFIQTDEKSRFKITPKQLKNALSPKTKMLILTTPSNPTGMLY
CCHHHCCHHHHHHCCHHHHHHHCCCCCCEEECHHHHHHHCCCCCEEEEEECCCCCCCCEE
SKAELEALGEVLKDTKIWVLSDEIYEKLVYKGEFVSCAAVSEEMKKRTITINGLSKSVAM
CHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCHHHHH
TGWRMGYAASKDKKLVKLMNNLQSQCTSNINSITQMASIVALEGLVDKEIETMRQAFEKR
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CDLAHAKINAIKGLNALKPDGAFYLFINIGSLCGGDSMRFCHELLEKEGVALVPGKAFGL
HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCCCCC
EGYVRLSFACSEEQIEKGIERIARFVKSKG
CCEEEEEEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1990006; 2155199 [H]