| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563082
Identifier: 108563082
GI number: 108563082
Start: 687947
End: 688813
Strand: Direct
Name: 108563082
Synonym: HPAG1_0657
Alternate gene names: NA
Gene position: 687947-688813 (Clockwise)
Preceding gene: 108563081
Following gene: 108563083
Centisome position: 43.09
GC content: 28.26
Gene sequence:
>867_bases GTGTCTGAAGAATGTAAAGTAAACCCTTTTTTTCATAGTTGGAGAGTAAGCTCTGAACAAAACCGCAAAGTCAATAAAAT TGCTGAAGATTTGAAAAATGGTAAGATAGTTGGTAAGAAGATTATTGATAATGTATTTGATATTAATGCTAGCTATTGTT TTATCACTCCTGAAGATTTAAAGAACTTAAAGGAACGATTGTTTATACAGCAAGATATTGATATCACCCATGTTATCAAT CAAAAAAAGGGAGAAGCGTTCGATCATATCTTAATAAATGACATTAAGTATAATTTGCTTGGTAACACATTCCATTTTAT CTTTAATGTGGATAACTCTTCTCAATTAACTATTAAAGTGCCTAGAAAAGATTTAGAAAATTATGAGTTACCTAACACTA AAAAAGATATATTTAATAAATTAATTAATATAAGAACAATTGATGAAAATTTAATTTTAAAAAATAATGAAGAAATTACC AACGATTTAAATCCTTTACTTGAGCAACTAAAAACTCAAGAATTTCCATTATCAGACGCTATTACAAAAGCCATCAATCA AAAAGAGAAAGGAATAGTACTTGATTATGCCTTAATAAATGACATTAAGTATAATTTGCTTGGTAACACATTCCATTTTA TCTTTAATGTTGGCAACTCTTTATTAAAAGAGTCAAGTCAGTTAATTATTGAAGTGTCTAGAGAAGCGTTGGATCTAGAG AATGTTGATCGGCTTATTGAAAATACGCTATCGTCCCATCGTGTTTGTTTTTGTAGCGAAATTCATAGTGTTTGTAGCGA AAATTCTTTAATATGTCATCTTAATCAAGGTTCTTATATCATTGATTTGCACTTAATAGATGACTAA
Upstream 100 bases:
>100_bases CTAATGAATTACCACAATTTCTTGCAAACTTTAAGTTTTCAAATGGCATGGTTATTCTAAAATTCCACAAGAAAAAAGGA TAACTCAAATAAAAAAACAA
Downstream 100 bases:
>100_bases ACCCTAAATGAAGCACCCCCTAGAAGAATTAAAAGACCCTGTAGAAAATCTTTTGCTGTGGATTGGGCGCTTTTTGCGCT ACAAATGCACGAGCCTGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSEECKVNPFFHSWRVSSEQNRKVNKIAEDLKNGKIVGKKIIDNVFDINASYCFITPEDLKNLKERLFIQQDIDITHVIN QKKGEAFDHILINDIKYNLLGNTFHFIFNVDNSSQLTIKVPRKDLENYELPNTKKDIFNKLINIRTIDENLILKNNEEIT NDLNPLLEQLKTQEFPLSDAITKAINQKEKGIVLDYALINDIKYNLLGNTFHFIFNVGNSLLKESSQLIIEVSREALDLE NVDRLIENTLSSHRVCFCSEIHSVCSENSLICHLNQGSYIIDLHLIDD
Sequences:
>Translated_288_residues MSEECKVNPFFHSWRVSSEQNRKVNKIAEDLKNGKIVGKKIIDNVFDINASYCFITPEDLKNLKERLFIQQDIDITHVIN QKKGEAFDHILINDIKYNLLGNTFHFIFNVDNSSQLTIKVPRKDLENYELPNTKKDIFNKLINIRTIDENLILKNNEEIT NDLNPLLEQLKTQEFPLSDAITKAINQKEKGIVLDYALINDIKYNLLGNTFHFIFNVGNSLLKESSQLIIEVSREALDLE NVDRLIENTLSSHRVCFCSEIHSVCSENSLICHLNQGSYIIDLHLIDD >Mature_287_residues SEECKVNPFFHSWRVSSEQNRKVNKIAEDLKNGKIVGKKIIDNVFDINASYCFITPEDLKNLKERLFIQQDIDITHVINQ KKGEAFDHILINDIKYNLLGNTFHFIFNVDNSSQLTIKVPRKDLENYELPNTKKDIFNKLINIRTIDENLILKNNEEITN DLNPLLEQLKTQEFPLSDAITKAINQKEKGIVLDYALINDIKYNLLGNTFHFIFNVGNSLLKESSQLIIEVSREALDLEN VDRLIENTLSSHRVCFCSEIHSVCSENSLICHLNQGSYIIDLHLIDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33277; Mature: 33146
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEECKVNPFFHSWRVSSEQNRKVNKIAEDLKNGKIVGKKIIDNVFDINASYCFITPEDL CCCCCCCCCCHHHEECCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHCCCCCEEEECHHHH KNLKERLFIQQDIDITHVINQKKGEAFDHILINDIKYNLLGNTFHFIFNVDNSSQLTIKV HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHEEEEEECCEEEEEEEECCCCEEEEEE PRKDLENYELPNTKKDIFNKLINIRTIDENLILKNNEEITNDLNPLLEQLKTQEFPLSDA CCCCCCCCCCCCCHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHH ITKAINQKEKGIVLDYALINDIKYNLLGNTFHFIFNVGNSLLKESSQLIIEVSREALDLE HHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHCHH NVDRLIENTLSSHRVCFCSEIHSVCSENSLICHLNQGSYIIDLHLIDD HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECC >Mature Secondary Structure SEECKVNPFFHSWRVSSEQNRKVNKIAEDLKNGKIVGKKIIDNVFDINASYCFITPEDL CCCCCCCCCHHHEECCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHCCCCCEEEECHHHH KNLKERLFIQQDIDITHVINQKKGEAFDHILINDIKYNLLGNTFHFIFNVDNSSQLTIKV HHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHEEEEEECCEEEEEEEECCCCEEEEEE PRKDLENYELPNTKKDIFNKLINIRTIDENLILKNNEEITNDLNPLLEQLKTQEFPLSDA CCCCCCCCCCCCCHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHH ITKAINQKEKGIVLDYALINDIKYNLLGNTFHFIFNVGNSLLKESSQLIIEVSREALDLE HHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEHHHHHHCHH NVDRLIENTLSSHRVCFCSEIHSVCSENSLICHLNQGSYIIDLHLIDD HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA