Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108562506

Identifier: 108562506

GI number: 108562506

Start: 81957

End: 83693

Strand: Direct

Name: 108562506

Synonym: HPAG1_0081

Alternate gene names: NA

Gene position: 81957-83693 (Clockwise)

Preceding gene: 108562505

Following gene: 108562507

Centisome position: 5.13

GC content: 41.91

Gene sequence:

>1737_bases
ATGAAAGCTATAAAAATACTTTTTATAATGACACTCAGTTTGAACGCTATCAGCGTGAATAGGGCGTTGTTTGATTTAAA
AGATTCGCAATTAAAAGGGGAATTAACGCCAAAAATAGTGAATTTTGGGGGTTATAGAAGCAGCACCAAAGAGTGGGGGG
CTAGCGCTTTAAACTATATCAATGCGGCTAATGGCGATGCGAAAAAATTCAGCGCGTTAGTGGAAAAAATGCGTTTTAAC
TCTGGCATCTTGGGGAATTTTAGAGCGCATGCGCGTTTGAGGCAAGCCCTAAAATTGCAAAAGAATTTGAAATATTGCCT
TAAAATCATCGCTAGGGATTCTTTTTATAGTTACCGCACCGGTATTTATATCCCCTTAGGGATTTCTTTAAAAGATCAAA
AAACGGCTCAAAAAATGCTCGCTGATTTGAGTGTGGTAGGGGCGTATCTTAAAAAACAACAAGAGAATGAAAAGGCTCAA
AGCCCTTATTACAGGAGCAACAACTATTACAACTCTTACTATAGCCCTTATTACGGAATGTATGGCATGTATGGAATGGG
CATGTATGGCATGGGCATGTATGATTTTTATGACTTTTATGATGGCATGTATGGCTTCTACCCTAACATGCTTTTCATGA
TGCAAGTTCAAGATTACTTGATGTTAGAAAATTATATGTATGCGCTCGATCAAGAAGAGATTTTAGACCATGACGCTTCC
ATTAACCAACTTGATACGCCTACTGATGATGACAGAGACGACAAGGACGATAAATCCTTACAGCAGGCAAATCTTATGAG
CTTTTATCGTGATCCCAAATTCAGCAAAGGTATTCAAACCAACCGCTTGAATAGTGCTTTAGTCAATTTAGACAACAGCC
GCATGCTTAAAGACAATTCGCTCTTCCACACCAAAGCCATGCCCACTAAAAGCGTGGATGCGATCACTTCTCAAGCTAAA
GAGCTTAACCATTTAGTGGGGCAAATCAAAGAGATGAAGCAAGATGGGGCGAGTCCTAGTAAGATTGATTCAGTGGTCAA
TAAAGCTATGGAAGTGAGAGACAAATTAGACAATAACTTGAACCAACTAGACAATGACTTAAAAGATCAAAAAGGGCTTT
CAAGCGAGCAACAAGTTCAAGTGGATAAAGCCCTAGACAGCGTGCAACAATTAAGCCATAGCAGCGATGTGGTGGGGAAT
TATTTAGATGGGAGTTTGAAAATTGATGGCGATGACAGAGACGATTTGAATGATGCGATGAATAACCCTATGCAACAACC
TATGCAACAAACGCCTACTAGCAACATGGACAACACCCATGCAAATGACAGCAAAGATCAAGGGGGTAATGTGCTCATAA
ACCCTAACAACACCACCAACGATGATCATAACGATGATCACATGGACACTAACACCACTGACACCGGCAACGCAAACGAC
ACCCCCACTGATGATAAAGATGCTGGTGGCAACAATACCGGCGATACCGGTGATATGAATAACACCGACACCGGCAATAC
TGATACCGGTAACACCGATGATATGAGCAACATGAACAGTGGCAACGATGATGCGGGTAACGCTAATGACGACATGGGTA
ATAGCAACGACATGGGCGATGGCATGAACGATGCGAACGACATGAACGACGATATGGGTAATGGCAACGATGACATGGGC
GATATGGGGGATATGAACGACGATATGGGTGGCGATATGGGAGACATGGGGAATTGA

Upstream 100 bases:

>100_bases
TTTTTAGGTTTTATTTTTTACTTTGGCTTGTTTTCAAAAATCATTTTGATTTCTAAAAATAGTCTATAATGCTTGCAAGA
GATATTTTTTAAGGTTATGA

Downstream 100 bases:

>100_bases
GATTAACCCCAATATCAAAGAGTGATAGCCAAAACTTTAAGGAATATTTTTATCCCACTAGCGCGAAAAACTCCGTCCTT
TAGGGTGCAAGATGTGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 578; Mature: 578

Protein sequence:

>578_residues
MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN
SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS
INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK
ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN
YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND
TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG
DMGDMNDDMGGDMGDMGN

Sequences:

>Translated_578_residues
MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN
SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS
INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK
ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN
YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND
TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG
DMGDMNDDMGGDMGDMGN
>Mature_578_residues
MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN
SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ
SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS
INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK
ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN
YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND
TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG
DMGDMNDDMGGDMGDMGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64410; Mature: 64410

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA