| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562506
Identifier: 108562506
GI number: 108562506
Start: 81957
End: 83693
Strand: Direct
Name: 108562506
Synonym: HPAG1_0081
Alternate gene names: NA
Gene position: 81957-83693 (Clockwise)
Preceding gene: 108562505
Following gene: 108562507
Centisome position: 5.13
GC content: 41.91
Gene sequence:
>1737_bases ATGAAAGCTATAAAAATACTTTTTATAATGACACTCAGTTTGAACGCTATCAGCGTGAATAGGGCGTTGTTTGATTTAAA AGATTCGCAATTAAAAGGGGAATTAACGCCAAAAATAGTGAATTTTGGGGGTTATAGAAGCAGCACCAAAGAGTGGGGGG CTAGCGCTTTAAACTATATCAATGCGGCTAATGGCGATGCGAAAAAATTCAGCGCGTTAGTGGAAAAAATGCGTTTTAAC TCTGGCATCTTGGGGAATTTTAGAGCGCATGCGCGTTTGAGGCAAGCCCTAAAATTGCAAAAGAATTTGAAATATTGCCT TAAAATCATCGCTAGGGATTCTTTTTATAGTTACCGCACCGGTATTTATATCCCCTTAGGGATTTCTTTAAAAGATCAAA AAACGGCTCAAAAAATGCTCGCTGATTTGAGTGTGGTAGGGGCGTATCTTAAAAAACAACAAGAGAATGAAAAGGCTCAA AGCCCTTATTACAGGAGCAACAACTATTACAACTCTTACTATAGCCCTTATTACGGAATGTATGGCATGTATGGAATGGG CATGTATGGCATGGGCATGTATGATTTTTATGACTTTTATGATGGCATGTATGGCTTCTACCCTAACATGCTTTTCATGA TGCAAGTTCAAGATTACTTGATGTTAGAAAATTATATGTATGCGCTCGATCAAGAAGAGATTTTAGACCATGACGCTTCC ATTAACCAACTTGATACGCCTACTGATGATGACAGAGACGACAAGGACGATAAATCCTTACAGCAGGCAAATCTTATGAG CTTTTATCGTGATCCCAAATTCAGCAAAGGTATTCAAACCAACCGCTTGAATAGTGCTTTAGTCAATTTAGACAACAGCC GCATGCTTAAAGACAATTCGCTCTTCCACACCAAAGCCATGCCCACTAAAAGCGTGGATGCGATCACTTCTCAAGCTAAA GAGCTTAACCATTTAGTGGGGCAAATCAAAGAGATGAAGCAAGATGGGGCGAGTCCTAGTAAGATTGATTCAGTGGTCAA TAAAGCTATGGAAGTGAGAGACAAATTAGACAATAACTTGAACCAACTAGACAATGACTTAAAAGATCAAAAAGGGCTTT CAAGCGAGCAACAAGTTCAAGTGGATAAAGCCCTAGACAGCGTGCAACAATTAAGCCATAGCAGCGATGTGGTGGGGAAT TATTTAGATGGGAGTTTGAAAATTGATGGCGATGACAGAGACGATTTGAATGATGCGATGAATAACCCTATGCAACAACC TATGCAACAAACGCCTACTAGCAACATGGACAACACCCATGCAAATGACAGCAAAGATCAAGGGGGTAATGTGCTCATAA ACCCTAACAACACCACCAACGATGATCATAACGATGATCACATGGACACTAACACCACTGACACCGGCAACGCAAACGAC ACCCCCACTGATGATAAAGATGCTGGTGGCAACAATACCGGCGATACCGGTGATATGAATAACACCGACACCGGCAATAC TGATACCGGTAACACCGATGATATGAGCAACATGAACAGTGGCAACGATGATGCGGGTAACGCTAATGACGACATGGGTA ATAGCAACGACATGGGCGATGGCATGAACGATGCGAACGACATGAACGACGATATGGGTAATGGCAACGATGACATGGGC GATATGGGGGATATGAACGACGATATGGGTGGCGATATGGGAGACATGGGGAATTGA
Upstream 100 bases:
>100_bases TTTTTAGGTTTTATTTTTTACTTTGGCTTGTTTTCAAAAATCATTTTGATTTCTAAAAATAGTCTATAATGCTTGCAAGA GATATTTTTTAAGGTTATGA
Downstream 100 bases:
>100_bases GATTAACCCCAATATCAAAGAGTGATAGCCAAAACTTTAAGGAATATTTTTATCCCACTAGCGCGAAAAACTCCGTCCTT TAGGGTGCAAGATGTGAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 578; Mature: 578
Protein sequence:
>578_residues MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG DMGDMNDDMGGDMGDMGN
Sequences:
>Translated_578_residues MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG DMGDMNDDMGGDMGDMGN >Mature_578_residues MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYINAANGDAKKFSALVEKMRFN SGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRTGIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQ SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNSLFHTKAMPTKSVDAITSQAK ELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGN YLDGSLKIDGDDRDDLNDAMNNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGDGMNDANDMNDDMGNGNDDMG DMGDMNDDMGGDMGDMGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64410; Mature: 64410
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 6.9 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 6.9 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYI CCCEEEEEHHHHHCCCEEHHHHHHHCCHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHH NAANGDAKKFSALVEKMRFNSGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRT HCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQSPYYRSNNYYNSYYSPYYGM CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH YGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS HHHHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCCCEECCCC LFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNL EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH NQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDAM HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH NNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND CCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GMNDANDMNDDMGNGNDDMGDMGDMNDDMGGDMGDMGN CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKAIKILFIMTLSLNAISVNRALFDLKDSQLKGELTPKIVNFGGYRSSTKEWGASALNYI CCCEEEEEHHHHHCCCEEHHHHHHHCCHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHH NAANGDAKKFSALVEKMRFNSGILGNFRAHARLRQALKLQKNLKYCLKIIARDSFYSYRT HCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC GIYIPLGISLKDQKTAQKMLADLSVVGAYLKKQQENEKAQSPYYRSNNYYNSYYSPYYGM CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH YGMYGMGMYGMGMYDFYDFYDGMYGFYPNMLFMMQVQDYLMLENYMYALDQEEILDHDAS HHHHHCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC INQLDTPTDDDRDDKDDKSLQQANLMSFYRDPKFSKGIQTNRLNSALVNLDNSRMLKDNS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCCCCEECCCC LFHTKAMPTKSVDAITSQAKELNHLVGQIKEMKQDGASPSKIDSVVNKAMEVRDKLDNNL EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH NQLDNDLKDQKGLSSEQQVQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDAM HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH NNPMQQPMQQTPTSNMDNTHANDSKDQGGNVLINPNNTTNDDHNDDHMDTNTTDTGNAND CCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TPTDDKDAGGNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSGNDDAGNANDDMGNSNDMGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GMNDANDMNDDMGNGNDDMGDMGDMNDDMGGDMGDMGN CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA