| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107023042
Identifier: 107023042
GI number: 107023042
Start: 1654508
End: 1655245
Strand: Reverse
Name: 107023042
Synonym: Bcen_1490
Alternate gene names: NA
Gene position: 1655245-1654508 (Counterclockwise)
Preceding gene: 107023043
Following gene: 107023039
Centisome position: 50.24
GC content: 72.09
Gene sequence:
>738_bases ATGCAGCCCGCGCAAGTAACGGCAGCGGGCGCGGCGGCCCCCGATCGCGTGCGCGGCGAGGACGTGTTTCTCGCCTCGAT CGCCGGCTACGTCGACACGCTCGGCTTCGTCGCGCTGTTCGGGCTCTTTACCGCGCACGTCACCGGCAACTTCATCCTGA TCGGCTCGGGCCTCGCCGGGGTCGGCCAGGGCCTGATGATCAAGTGGCTCGCGTTTCCGGCGTTCATCGCGGGCATCGTC GCCGCTCGCGTGCTCGATCACCGGATGCGCGTGCGCGGGCATGGCGTGCGGGCGCGCTCGCTGTACGCACTGCAGACGAT CCTGCTGGCCGGATTCATGCTCGCGGGCGTCGCGGCGTCGCCGATCGGCAGCGCCGATGCGCCCGCGACGATCGTCTGCG GGCTGCTGGGCGCGGCGGCAATGGGCGTGCAGAACGCGCACGGCCGGCTGACCGCGCGCACCGTCGTCGCGAACACCGTG ATGACCGGCAACGTCACGCAGGCGGTCATCGATGCATTCGACTGGCTGGTGCCGATCGCCGCGCCGGCCGAACGGGAAGC CGCATGCGCGCGGCTGCGACGCACGTTGCCGCCGGTGGTCGGGTTCGCGCTCGGCGCGGGCGCCGGGGCGAGTGCCTACG TGTACGCCGGGTTCTGGACACTGGTGTTGCCACTCGCGGCGCTGGGTTTCCTCACCTGGCGCTCCGGCCGGACCGGCGAA CCGTCCGCGTCGCGCTGA
Upstream 100 bases:
>100_bases TCCGCGAGCATGCGATCCCGCTCGTGCCGGCGCCGTTTCGTGCGCTCGCCGCGCAGGCCCGCGATGCGGACACCATCGAC ACAACCGCGGAAGCCACGAC
Downstream 100 bases:
>100_bases GCGCGGTTTCCGCGCGCGGCGTCGGCTGCGTGCGCGACCGGGGCGGCGGCGAAGCCGCGCTGCGTTTCTTCATTTCCTTC AACGCAGATTTCGAGAACGG
Product: hypothetical protein
Products: NA
Alternate protein names: Permease Transmembrane Protein
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE PSASR
Sequences:
>Translated_245_residues MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE PSASR >Mature_245_residues MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGVGQGLMIKWLAFPAFIAGIV AARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAASPIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTV MTGNVTQAVIDAFDWLVPIAAPAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE PSASR
Specific function: Unknown
COG id: COG3619
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25113; Mature: 25113
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH VGQGLMIKWLAFPAFIAGIVAARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAAS HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC PIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTVMTGNVTQAVIDAFDWLVPIA CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC APAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PSASR CCCCC >Mature Secondary Structure MQPAQVTAAGAAAPDRVRGEDVFLASIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH VGQGLMIKWLAFPAFIAGIVAARVLDHRMRVRGHGVRARSLYALQTILLAGFMLAGVAAS HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC PIGSADAPATIVCGLLGAAAMGVQNAHGRLTARTVVANTVMTGNVTQAVIDAFDWLVPIA CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC APAEREAACARLRRTLPPVVGFALGAGAGASAYVYAGFWTLVLPLAALGFLTWRSGRTGE CCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PSASR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA