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The map label for this gene is ydcR [C]

Identifier: 107022985

GI number: 107022985

Start: 1587958

End: 1589370

Strand: Reverse

Name: ydcR [C]

Synonym: Bcen_1433

Alternate gene names: 107022985

Gene position: 1589370-1587958 (Counterclockwise)

Preceding gene: 107022988

Following gene: 107022984

Centisome position: 48.24

GC content: 69.85

Gene sequence:

>1413_bases
ATGGCATCAGACAAACTTTCTGGCGAGCGCGATGGCGGCCTGCCGGCACCGGCGAAGCGACCGACCTACGTCGAGGTCTC
GAGCTCGATCGAGGCGGAAATCCGCAACGGCATGTATCCGCCCGGCAGCCGCCTGCCGCCGCAGCGCCAGCTCGCGACCG
AACTCGGCATCAACGTGTCGACGGTGTCGCGTGCGTACAAGGAATTGCAACTGCGCGGCCTCGTGATCGGCAGCAAGCGT
CGCGGCTCGCTCGTCACCGGTGGCGCGATGCCGAGCATCGAGCCGGCCCGCGCGTCGCTTGCGGCGGGCAACGGCGTGAT
CGACCTGACCGTGAACCGCCCGGCGACGGGCGAATTTCTCGCGAGCCTCGCGCAGACCTTCGCCACGCTGCCGAACGACC
CGCGCTTCGCCGCGCTGCAGGAATACCAGCCGCCGCAAGGCCCCGACTGGGCGCGTGCGGCCGGCGCGCAGTGGCTGGCC
GCGCCGGGCTTCGCGCCGTCGCCCGACCAGGTGGTCGTCACGAGCGGCGCGCAGCACGGGCTGTATGCGGTACTCAACAG
CCTGATCGGCACCGACGGTGTGATCGTCGCCGACCGCCTCACGTATTACGGGCTCAAGGCGCTCGCGCCGGTGTTCCAGT
TCGAGATCGTCAGCGCGCCAGCCGACGACGACGGCCTGCTGCCCGACGAGATCGAACGGATCTGCCAGCGCATGCCGGTC
AAGGCGATCTTCGTCGTGCCTAATCTGCAAAACCCGACCGTGACGACGATGAGCCTCGCGCGCCGCATGGCGCTCGTCGA
CATCGCGCGGCGCCATCACGTGACGATCATCGAGGACGACGTGTACGGCCCGCTCGTGCGCGACCGGCTGCCGGCGATCG
CGGGGCTGTGCCCGGAGCTGACGTTCCATATCGGCGCGACGTCGAAGATCCTCGCGCCGGGGCTGCGCCTCGGCTACCTG
AGCTGTCCGCGCGACAGCGTCGCGCTGTGCGCGGAAGCCGTGCGGACCACCGCATGGATGCCGGCGCCCACGTCGATGTT
GATCGCGACGGTATGGATCGAGGACGGCACCGCCGAGCGGATCATGGCCGCGCAACTCGCGGAGATTCGCGCACGCGTCG
ATCTCGCGCGGGAACTGCTGCCGGCCGGGCAACTGAAGGCCGACCCCGCCTGCATGTTCGTGTGGCTGCGGCTGCCGCCG
CCGTGGCGGGCCGACGACTTCGCCGCGAATGCGAAAGCGCGCGGCGTGATCGTGATGCCGTCGTCGACTTTCGCGGTCGA
CCGCGCGGAACTCGAGCACGGCGTGCGCATCAACCTCGCGTGCCCGGCCACCCGCGACGAACTCGTCAACGGGCTGCGCA
TCCTGTCCGGCACGCTGAAGGACCGGCCGCGCGCGCTGTTCGGTTCGATCTGA

Upstream 100 bases:

>100_bases
GACTTTTCAGTGAATGATTGACGGGGCGGGGAGGTCCTATACAATCGCGGGGCAAGCCAAAACGGCAGACAAACGCTTTT
TGTGTGGTCACGGGCGATAG

Downstream 100 bases:

>100_bases
CGGCGCCGGCTCAGTCGAGCCACCCCGCGACGACGTCGACGATCCGCTGCAGCAGCGCTTCGTCACAAGGCAGCCACGGC
ACCGCGCGCAGCAGCGACGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MASDKLSGERDGGLPAPAKRPTYVEVSSSIEAEIRNGMYPPGSRLPPQRQLATELGINVSTVSRAYKELQLRGLVIGSKR
RGSLVTGGAMPSIEPARASLAAGNGVIDLTVNRPATGEFLASLAQTFATLPNDPRFAALQEYQPPQGPDWARAAGAQWLA
APGFAPSPDQVVVTSGAQHGLYAVLNSLIGTDGVIVADRLTYYGLKALAPVFQFEIVSAPADDDGLLPDEIERICQRMPV
KAIFVVPNLQNPTVTTMSLARRMALVDIARRHHVTIIEDDVYGPLVRDRLPAIAGLCPELTFHIGATSKILAPGLRLGYL
SCPRDSVALCAEAVRTTAWMPAPTSMLIATVWIEDGTAERIMAAQLAEIRARVDLARELLPAGQLKADPACMFVWLRLPP
PWRADDFAANAKARGVIVMPSSTFAVDRAELEHGVRINLACPATRDELVNGLRILSGTLKDRPRALFGSI

Sequences:

>Translated_470_residues
MASDKLSGERDGGLPAPAKRPTYVEVSSSIEAEIRNGMYPPGSRLPPQRQLATELGINVSTVSRAYKELQLRGLVIGSKR
RGSLVTGGAMPSIEPARASLAAGNGVIDLTVNRPATGEFLASLAQTFATLPNDPRFAALQEYQPPQGPDWARAAGAQWLA
APGFAPSPDQVVVTSGAQHGLYAVLNSLIGTDGVIVADRLTYYGLKALAPVFQFEIVSAPADDDGLLPDEIERICQRMPV
KAIFVVPNLQNPTVTTMSLARRMALVDIARRHHVTIIEDDVYGPLVRDRLPAIAGLCPELTFHIGATSKILAPGLRLGYL
SCPRDSVALCAEAVRTTAWMPAPTSMLIATVWIEDGTAERIMAAQLAEIRARVDLARELLPAGQLKADPACMFVWLRLPP
PWRADDFAANAKARGVIVMPSSTFAVDRAELEHGVRINLACPATRDELVNGLRILSGTLKDRPRALFGSI
>Mature_469_residues
ASDKLSGERDGGLPAPAKRPTYVEVSSSIEAEIRNGMYPPGSRLPPQRQLATELGINVSTVSRAYKELQLRGLVIGSKRR
GSLVTGGAMPSIEPARASLAAGNGVIDLTVNRPATGEFLASLAQTFATLPNDPRFAALQEYQPPQGPDWARAAGAQWLAA
PGFAPSPDQVVVTSGAQHGLYAVLNSLIGTDGVIVADRLTYYGLKALAPVFQFEIVSAPADDDGLLPDEIERICQRMPVK
AIFVVPNLQNPTVTTMSLARRMALVDIARRHHVTIIEDDVYGPLVRDRLPAIAGLCPELTFHIGATSKILAPGLRLGYLS
CPRDSVALCAEAVRTTAWMPAPTSMLIATVWIEDGTAERIMAAQLAEIRARVDLARELLPAGQLKADPACMFVWLRLPPP
WRADDFAANAKARGVIVMPSSTFAVDRAELEHGVRINLACPATRDELVNGLRILSGTLKDRPRALFGSI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=326, Percent_Identity=23.3128834355828, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33469970, Length=326, Percent_Identity=23.3128834355828, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=432, Percent_Identity=27.5462962962963, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790797, Length=464, Percent_Identity=23.2758620689655, Blast_Score=101, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6321000, Length=220, Percent_Identity=26.3636363636364, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21356535, Length=350, Percent_Identity=24, Blast_Score=85, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50439; Mature: 50308

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKLSGERDGGLPAPAKRPTYVEVSSSIEAEIRNGMYPPGSRLPPQRQLATELGINVS
CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHH
TVSRAYKELQLRGLVIGSKRRGSLVTGGAMPSIEPARASLAAGNGVIDLTVNRPATGEFL
HHHHHHHHHHHEEEEEECCCCCCEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHH
ASLAQTFATLPNDPRFAALQEYQPPQGPDWARAAGAQWLAAPGFAPSPDQVVVTSGAQHG
HHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEECCCCCC
LYAVLNSLIGTDGVIVADRLTYYGLKALAPVFQFEIVSAPADDDGLLPDEIERICQRMPV
HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCC
KAIFVVPNLQNPTVTTMSLARRMALVDIARRHHVTIIEDDVYGPLVRDRLPAIAGLCPEL
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCHH
TFHIGATSKILAPGLRLGYLSCPRDSVALCAEAVRTTAWMPAPTSMLIATVWIEDGTAER
EEECCCCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHH
IMAAQLAEIRARVDLARELLPAGQLKADPACMFVWLRLPPPWRADDFAANAKARGVIVMP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC
SSTFAVDRAELEHGVRINLACPATRDELVNGLRILSGTLKDRPRALFGSI
CCCCEEEHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
ASDKLSGERDGGLPAPAKRPTYVEVSSSIEAEIRNGMYPPGSRLPPQRQLATELGINVS
CCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHH
TVSRAYKELQLRGLVIGSKRRGSLVTGGAMPSIEPARASLAAGNGVIDLTVNRPATGEFL
HHHHHHHHHHHEEEEEECCCCCCEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCHHHH
ASLAQTFATLPNDPRFAALQEYQPPQGPDWARAAGAQWLAAPGFAPSPDQVVVTSGAQHG
HHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEECCCCCC
LYAVLNSLIGTDGVIVADRLTYYGLKALAPVFQFEIVSAPADDDGLLPDEIERICQRMPV
HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHCCC
KAIFVVPNLQNPTVTTMSLARRMALVDIARRHHVTIIEDDVYGPLVRDRLPAIAGLCPEL
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCHH
TFHIGATSKILAPGLRLGYLSCPRDSVALCAEAVRTTAWMPAPTSMLIATVWIEDGTAER
EEECCCCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHH
IMAAQLAEIRARVDLARELLPAGQLKADPACMFVWLRLPPPWRADDFAANAKARGVIVMP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC
SSTFAVDRAELEHGVRINLACPATRDELVNGLRILSGTLKDRPRALFGSI
CCCCEEEHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]