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The map label for this gene is ydcR [H]

Identifier: 107022984

GI number: 107022984

Start: 1585388

End: 1586812

Strand: Reverse

Name: ydcR [H]

Synonym: Bcen_1432

Alternate gene names: 107022984

Gene position: 1586812-1585388 (Counterclockwise)

Preceding gene: 107022985

Following gene: 107022982

Centisome position: 48.16

GC content: 64.77

Gene sequence:

>1425_bases
ATGAAACTCTATGAAAAACTCGCGGACGACATCGAGCGTCTGATCCGCCAGGGTGTGTACCGGCACGGCGACCGGATTCC
GTCGGTGCGGCAGGCGAGCCAGCAGCACCGGATCAGCATCACGACCGTGCTGCATGCCTATCTGCTGCTGGAAAGCCGCG
GGTTGCTCGAAAGCCGGCCGCAGTCGGGCTATTTCGTGAACCTGCGGCGCGACGACGGCCACGCACCGGTGCGCGAGCTG
CGGCCGTCGAAGCCGATCGCGATCTCGTCGTCGGTGGACGTGAGCCGGCTCGTGCTGTCGACGCTGCGCTCGATCGGCAC
GGACGACGCGGTGCCGCTCGGCTCGCCGTATCCGGACCCGAGCCTGTTTCCGTTCGAGAAGCTGAACCGCTACGCGTATG
CGGCCGGTCGCGACAAGTCGCTGTGGGGCGTGACGGACGGGCTGCCGCCGGGCCATCCGCGGCTGATCCGGCAGATCGCG
CGGCGCTATCTGGAGAACGGGATGTCGGTGGACCCGAATGAGATCATCGTGACGGTCGGTGCGACGGAGGCGATCAACCT
GTGCCTGCAGGCGGTGGCGAAGCCGGGCGACACGATCGCGGTGGAGTCGCCGACGTTCTACGCGATGCTGCACGCGATCG
AGCGGATGGGGATGAAGGCGATCGAGGTGGCGACGCATCCGGAATACGGGATCGACATCGCGGCGCTGGCAGCGATCGCG
AAATCGCAGCCGATTGCCGCGTGCATGGTGATGCCGAACTTCCAGAACCCGCTGGGCTTCCAGATGCCGGACGAGCGCAA
GCGCGAACTGGTTGAGTTCGCAACGAAGGCCGGCATACCGATCATCGAGAACGGTGTGTATAACGAACTGTATTTCGGCG
ATACGCATCCGAGTTCGCTGAAGTCCTACGACCGGACCGGGATCGTGCTGCATTGTTCGTCGTTCTCGAAGAGCCTGACG
GCCGCGTACCGGATCGGCTGGGCGCTGCCGGGCCGCTATCGCGATCAGGTCGAGAAGCTGAAGTTCCTGAATACGCTGGC
GACGCCGTCATTGCCGCAGTTGGCGATCGCGGAGTTTCTGGAACGCGACGGCTACGAGCATCACCTGCGACGCTTGCGCA
AGGCGTATGCGCAGCAGGCGAACCTGATGCGCGCGATGGTGTCGCGGTTTTTTCCGGAGGGCACGCGCATTTCGAGCCCG
GCGGGTGGGTACGTGCTGTGGGTCGAGCTGCCCGCGCAGGTTGACGCGATGCGGTTGTACCAGCTCGCGCTGGAGCAGGG
GATCACGATCGGCCCCGGCTACATGTTCTCGATCACCGACAATTACCGGAACTTCATCCGGTTGAACTACAGCAGCCCGT
GGTCGCCGGAGATCGAGCAGGCGGTGATCACGGTCGGGAAGCTGGCCGCGGCGTGCATGCGGTGA

Upstream 100 bases:

>100_bases
ATCACGACGGCCCGGTCGGCGGGCGAAACACGTGCAACGCGTGCGTATCGGGCGCACACGGCGGGGCGACGGGGCGGCGC
GCGCCGGCAGGAGACGCACG

Downstream 100 bases:

>100_bases
ACGGGTGGGTGACATGGATCGCGGGCGGCGAGACCTGCCGCGTGCGATTCATGTCGTTCAAGCCCAGCCGGCCGCCGAAA
ACGACCGTGCGGCCGATCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MKLYEKLADDIERLIRQGVYRHGDRIPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATKAGIPIIENGVYNELYFGDTHPSSLKSYDRTGIVLHCSSFSKSLT
AAYRIGWALPGRYRDQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAACMR

Sequences:

>Translated_474_residues
MKLYEKLADDIERLIRQGVYRHGDRIPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATKAGIPIIENGVYNELYFGDTHPSSLKSYDRTGIVLHCSSFSKSLT
AAYRIGWALPGRYRDQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAACMR
>Mature_474_residues
MKLYEKLADDIERLIRQGVYRHGDRIPSVRQASQQHRISITTVLHAYLLLESRGLLESRPQSGYFVNLRRDDGHAPVREL
RPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDPSLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIA
RRYLENGMSVDPNEIIVTVGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
KSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATKAGIPIIENGVYNELYFGDTHPSSLKSYDRTGIVLHCSSFSKSLT
AAYRIGWALPGRYRDQVEKLKFLNTLATPSLPQLAIAEFLERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSP
AGGYVLWVELPAQVDAMRLYQLALEQGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAACMR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=392, Percent_Identity=24.234693877551, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI33469970, Length=392, Percent_Identity=24.234693877551, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4507369, Length=354, Percent_Identity=24.5762711864407, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=40.5982905982906, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790797, Length=473, Percent_Identity=37.6321353065539, Blast_Score=306, Evalue=1e-84,
Organism=Saccharomyces cerevisiae, GI6321000, Length=315, Percent_Identity=22.8571428571429, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=277, Percent_Identity=25.9927797833935, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356535, Length=296, Percent_Identity=23.9864864864865, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52952; Mature: 52952

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYEKLADDIERLIRQGVYRHGDRIPSVRQASQQHRISITTVLHAYLLLESRGLLESRP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
QSGYFVNLRRDDGHAPVRELRPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDP
CCCEEEEEECCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIVTVG
CCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
ATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
KSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATKAGIPIIENGVYNELYFGDTHPSSL
CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCHHH
KSYDRTGIVLHCSSFSKSLTAAYRIGWALPGRYRDQVEKLKFLNTLATPSLPQLAIAEFL
HHCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWVELPAQVDAMRLY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
QLALEQGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAACMR
HHHHHCCCEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLYEKLADDIERLIRQGVYRHGDRIPSVRQASQQHRISITTVLHAYLLLESRGLLESRP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
QSGYFVNLRRDDGHAPVRELRPSKPIAISSSVDVSRLVLSTLRSIGTDDAVPLGSPYPDP
CCCEEEEEECCCCCCCHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SLFPFEKLNRYAYAAGRDKSLWGVTDGLPPGHPRLIRQIARRYLENGMSVDPNEIIVTVG
CCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC
ATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERMGMKAIEVATHPEYGIDIAALAAIA
CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
KSQPIAACMVMPNFQNPLGFQMPDERKRELVEFATKAGIPIIENGVYNELYFGDTHPSSL
CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCHHH
KSYDRTGIVLHCSSFSKSLTAAYRIGWALPGRYRDQVEKLKFLNTLATPSLPQLAIAEFL
HHCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ERDGYEHHLRRLRKAYAQQANLMRAMVSRFFPEGTRISSPAGGYVLWVELPAQVDAMRLY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
QLALEQGITIGPGYMFSITDNYRNFIRLNYSSPWSPEIEQAVITVGKLAAACMR
HHHHHCCCEECCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]