| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mdtP [H]
Identifier: 103488590
GI number: 103488590
Start: 3263368
End: 3264795
Strand: Direct
Name: mdtP [H]
Synonym: Sala_3114
Alternate gene names: 103488590
Gene position: 3263368-3264795 (Clockwise)
Preceding gene: 103488588
Following gene: 103488591
Centisome position: 97.55
GC content: 71.64
Gene sequence:
>1428_bases ATGCCTCGATTCATTTTTGTTACAACTGCGGTTCTTGGCCTGTTGGCGGGTTGCGCGAGCGTTCCCGACCTCGGCCCCAG GCCCGTTGAGGCGGCGCCGGGGTCGCTGGTGTCAAGCGCGTCGCTCGCTGCGGCGCCCGGCGCGTGGCCGGTGGAGGGCT GGTGGCAAGGCTTCGGCGACACGCAGCTCGATCGCCTGATCGCCGAGGGGCTGGCGGGATCGCCCGACGTCGCGATTGCC GCGGCGCGCGTGCGCGCGGCGGAGGCTCTGGCGCAGCAGGCGGGCGCTGCGCTGCTGCCGCGCGTCGGCGCCGAAGCGGG CGCGGGCGGCGTCCAGCAGAGCCGCAACATGGGAATCCCGCCGCAGTTCGTCCCCGACGGGGTGCGGGACACGGGACATG TCGCCGCGACTTTCGGCTTTGATCTCGACCTGTGGGGGCGCAATCGCGCCGCGCTTGCCGCCGCGACCTCCGAAGCTGAG GCAGCGCGCGTTGATGCGGCACAGGCGCGGCTGATGCTCGCGACGGGAATCGCCGCGGCCTATGCCGATCTGGCCGGCTA TTATGACGCGCTCGACGTCGCCAGCGAGGCGGTGCGCGTGCGTAGCGCGACCGCGCGTCTCGCCGCCGACCGCGCGCGCG CGGGACTCGAAAATCAGGCGAACCAGCGTCAGGCCGAAAGCCGCGCGGCGTCGGCAACGGCGGACGTCGTCGCGCTCGAA GAAGCGATCGCGGCGACGCGCCACCGCATCGCGGCGCTCGTCGGCGCCGGCCCCGACCGCGGTTTGTCGATCACGCGCCC GCAGATGAGGCGGCCGACGCTGGGCCTCCCCGAAAATGCCGGGATCGACCTGATCGGCCGCCGCCCCGACATCGTCGCGG CGCGGCTGCGCAGCGAGGCGGCCGCGAAGCGTATCGACGTCGCCCGCGCCGACTTTTACCCGAATATCAGCCTGTCGGCG CTCGTCGGGCTCCAATCGCTCGGCCTCTCCAACCTGTTCGACGCGGGCTCCGAATATGGCAGCGGCGGCGCGGCGATCAG TTTGCCGATCTTTGAAGGCGGGCGGCTTTCGGGGCGTTATCGCGGCGCCCGCGCCGACTATGACGGCGCCATCGCCGCCT ATGACCGCACGCTGATCGACGCGCTGCGCGACGTCGCCGATATTGTGGCGAGCCGCGCCGCGACCGAGCGCCAGCTCGCC GGGCGCCGGGCGGCGCTCGAGGCCGCTGCCGAAGCCTCTAAACTCGCCAATCTGCGCTATCGCGCCGGCCTTGCCAACCA GATCGAACAGCTGACGGCCGAAGATTCGATGATCGCGCTGAACCGCGCCGTGACCGATCTCGAAGCGCGCCAGCTGGCGC TCGACATCGCGCTGATCCGGGCGCTCGGCGGCGGATACCAGGCGCCCGACCCGACAGGAGACGAATGA
Upstream 100 bases:
>100_bases GCGTCGTCGATAGCAGGCGTACTGTCTGGTATCATTTCGATTGACAATGCTTCCTCCGCAGTTCATCTGCGCATGATACC AGCTAGTATCGTTGGAAGCC
Downstream 100 bases:
>100_bases TGGCCGATGAAACGGCGGCTGCCGACATCGACGCGCTGGAAACATATGGCGCGAAACGCCGGAAGCTGCTCCGCATCCTT GCGCTCGTCGTGCTGGCCGC
Product: RND efflux system, outer membrane lipoprotein, NodT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIA AARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAE AARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSA LVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLA GRRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE
Sequences:
>Translated_475_residues MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIA AARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAE AARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSA LVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLA GRRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE >Mature_474_residues PRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGDTQLDRLIAEGLAGSPDVAIAA ARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIPPQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEA ARVDAAQARLMLATGIAAAYADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALEE AIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEAAAKRIDVARADFYPNISLSAL VGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRYRGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAG RRAALEAAAEASKLANLRYRAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE
Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI2367348, Length=480, Percent_Identity=31.0416666666667, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI1786785, Length=460, Percent_Identity=27.3913043478261, Blast_Score=127, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 49069; Mature: 48938
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGD CCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCHHHHCCCCH TQLDRLIAEGLAGSPDVAIAAARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCC PQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEAARVDAAQARLMLATGIAAA CCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH YADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEA HHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH AAKRIDVARADFYPNISLSALVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRY HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC RGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAGRRAALEAAAEASKLANLRY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PRFIFVTTAVLGLLAGCASVPDLGPRPVEAAPGSLVSSASLAAAPGAWPVEGWWQGFGD CCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCHHHHCCCCH TQLDRLIAEGLAGSPDVAIAAARVRAAEALAQQAGAALLPRVGAEAGAGGVQQSRNMGIP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCC PQFVPDGVRDTGHVAATFGFDLDLWGRNRAALAAATSEAEAARVDAAQARLMLATGIAAA CCCCCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH YADLAGYYDALDVASEAVRVRSATARLAADRARAGLENQANQRQAESRAASATADVVALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH EAIAATRHRIAALVGAGPDRGLSITRPQMRRPTLGLPENAGIDLIGRRPDIVAARLRSEA HHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHH AAKRIDVARADFYPNISLSALVGLQSLGLSNLFDAGSEYGSGGAAISLPIFEGGRLSGRY HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC RGARADYDGAIAAYDRTLIDALRDVADIVASRAATERQLAGRRAALEAAAEASKLANLRY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAGLANQIEQLTAEDSMIALNRAVTDLEARQLALDIALIRALGGGYQAPDPTGDE HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]