| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488447
Identifier: 103488447
GI number: 103488447
Start: 3113942
End: 3114445
Strand: Direct
Name: 103488447
Synonym: Sala_2970
Alternate gene names: NA
Gene position: 3113942-3114445 (Clockwise)
Preceding gene: 103488446
Following gene: 103488449
Centisome position: 93.09
GC content: 77.18
Gene sequence:
>504_bases ATGAGCAGGTCGGGGTTACGCCATGCGACGGTCGCGGCGGGCGCGCTGGTGCTCGCGGGCTGCGCGGCCATCCCGCAGCC CGCAGCACCGCCCCCCGCGCCGGGGCCCGCCGCGCCCGCGCCGACACCCGCGCCGCTGCCGACCCCGACGCCGGGATGGG AGGACCGCGCGGTCGATCGTGGCGCGTGGCGTTATGACGCCGCCAGCCGCACTGCCGCCTTCGTGCCGGCGGCGCGCGCC AGCCCGCTCCTGACGATGGCGTGCAGCGGCGACGGCATCCGCCTGACCTCCACGCTCGACGGCGCGGTCAGCCTGCGCAC CAGCGCGGGCACCGACCAGCTCCGCTTCGAGCGCGGTAGCGCGACGCTGCCCAGCCGCGACCCGCGCCTCGACCGCATCG CCTTCAGCCGTGGCCGCTTCGCGCTCGAAACGCCGGGCGGCGGCGCGCTGACCCTGCCGGTACAGGCGGAAATCGGGCGG GTGATCGAGGATTGTCGGGGGTAG
Upstream 100 bases:
>100_bases GGCTGGCGATCGGCTATGCCGACGAGGATGCGGCGGTGAACCAGTGGCCGGTGCCGCGCGCGCCGATCGACGAAGCGATT GACTGGAAAGGATTTGGGAC
Downstream 100 bases:
>100_bases TTGCGCGCGATTGCGGTTTTGGGGTGGTGATCTGCCGTTGATGATCCTCCCCATCGACTTGCGATGGGGAGGATCTTATT ATGTCCGCAATCGGCCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSRSGLRHATVAAGALVLAGCAAIPQPAAPPPAPGPAAPAPTPAPLPTPTPGWEDRAVDRGAWRYDAASRTAAFVPAARA SPLLTMACSGDGIRLTSTLDGAVSLRTSAGTDQLRFERGSATLPSRDPRLDRIAFSRGRFALETPGGGALTLPVQAEIGR VIEDCRG
Sequences:
>Translated_167_residues MSRSGLRHATVAAGALVLAGCAAIPQPAAPPPAPGPAAPAPTPAPLPTPTPGWEDRAVDRGAWRYDAASRTAAFVPAARA SPLLTMACSGDGIRLTSTLDGAVSLRTSAGTDQLRFERGSATLPSRDPRLDRIAFSRGRFALETPGGGALTLPVQAEIGR VIEDCRG >Mature_166_residues SRSGLRHATVAAGALVLAGCAAIPQPAAPPPAPGPAAPAPTPAPLPTPTPGWEDRAVDRGAWRYDAASRTAAFVPAARAS PLLTMACSGDGIRLTSTLDGAVSLRTSAGTDQLRFERGSATLPSRDPRLDRIAFSRGRFALETPGGGALTLPVQAEIGRV IEDCRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17074; Mature: 16942
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSGLRHATVAAGALVLAGCAAIPQPAAPPPAPGPAAPAPTPAPLPTPTPGWEDRAVDR CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAWRYDAASRTAAFVPAARASPLLTMACSGDGIRLTSTLDGAVSLRTSAGTDQLRFERGS CCEEECCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCEEEECCC ATLPSRDPRLDRIAFSRGRFALETPGGGALTLPVQAEIGRVIEDCRG CCCCCCCCCCHHEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHCC >Mature Secondary Structure SRSGLRHATVAAGALVLAGCAAIPQPAAPPPAPGPAAPAPTPAPLPTPTPGWEDRAVDR CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAWRYDAASRTAAFVPAARASPLLTMACSGDGIRLTSTLDGAVSLRTSAGTDQLRFERGS CCEEECCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCEEEECCC ATLPSRDPRLDRIAFSRGRFALETPGGGALTLPVQAEIGRVIEDCRG CCCCCCCCCCHHEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA