Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488446

Identifier: 103488446

GI number: 103488446

Start: 3113238

End: 3113945

Strand: Direct

Name: 103488446

Synonym: Sala_2969

Alternate gene names: NA

Gene position: 3113238-3113945 (Clockwise)

Preceding gene: 103488445

Following gene: 103488447

Centisome position: 93.07

GC content: 67.23

Gene sequence:

>708_bases
ATGCCAGCGACTGACATGCCAGCGACCGACATGAGCGTGACGCAGGCGCTCCGCCGGCGGCGTTCGGTGCGCGCCTTCAC
CGACCGGTCGGTCGATCCCGCGCTGCTGAAAGAGATTTTCGCGGCGGCGCAGCGCGCCCCCTCGGGCGGCAATCTTCAGC
CGTGGCAGGCGACGGTGCTCACCGGCGAAGCGTGGCAGGCGGTCAGGCAAGCCGTCGCCGCGCGGATCGCGATGGGGCGC
GCGGGGCAGGAGCCCGAATATGACATCTATCCCCCGGCGCTCACCGCGCCGTGGACCGACCGCCGCTTTGGTGTCGGCGA
GGCGCTCTATGCCTCGCTCGGCATCCCGCGCGAGGACAAAAGAGGGCGACTCGCTCAGTTCATGGACAATTACCGGGGTT
TCGGCGCACCGGTGATGCTTTTCCTCCATTGCTCGCGCATCATGGGGCCACCGCAATGGGCCGACATGGGCATGTGGCTG
CAATCGGTGATGCTGATGCTCGTCGAACAGGGCCTCGCCAGCTGCCCGCAGGAATGCTGGGCGATGTATGGCGCGACCGT
GCGGCGCACGATCGGGCTGGGCGACGACCAGATTTTGTTCACCGGGCTGGCGATCGGCTATGCCGACGAGGATGCGGCGG
TGAACCAGTGGCCGGTGCCGCGCGCGCCGATCGACGAAGCGATTGACTGGAAAGGATTTGGGACATGA

Upstream 100 bases:

>100_bases
GTCGCCGAAGAGGATGACGTCTTCCTGCTTTCCTACTACCGGCAACTGAAGGCACGGCTCGAACGCGGCCTGCTGTTCGG
AAAGAGGCGAGAGGATAAAT

Downstream 100 bases:

>100_bases
GCAGGTCGGGGTTACGCCATGCGACGGTCGCGGCGGGCGCGCTGGTGCTCGCGGGCTGCGCGGCCATCCCGCAGCCCGCA
GCACCGCCCCCCGCGCCGGG

Product: nitroreductase

Products: NA

Alternate protein names: Nitroreductase Family Protein; Oxidoreductase; P-Nitrobenzoate Reductase; NfnB Protein; NADH Dehydrogenase; Oxidoreductase Protein; Nitroreductase Family; Nitrobenzene Nitroreductase; Nitrobenzoate Nitroreductase; Nitrobenzoate Reductase

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPATDMPATDMSVTQALRRRRSVRAFTDRSVDPALLKEIFAAAQRAPSGGNLQPWQATVLTGEAWQAVRQAVAARIAMGR
AGQEPEYDIYPPALTAPWTDRRFGVGEALYASLGIPREDKRGRLAQFMDNYRGFGAPVMLFLHCSRIMGPPQWADMGMWL
QSVMLMLVEQGLASCPQECWAMYGATVRRTIGLGDDQILFTGLAIGYADEDAAVNQWPVPRAPIDEAIDWKGFGT

Sequences:

>Translated_235_residues
MPATDMPATDMSVTQALRRRRSVRAFTDRSVDPALLKEIFAAAQRAPSGGNLQPWQATVLTGEAWQAVRQAVAARIAMGR
AGQEPEYDIYPPALTAPWTDRRFGVGEALYASLGIPREDKRGRLAQFMDNYRGFGAPVMLFLHCSRIMGPPQWADMGMWL
QSVMLMLVEQGLASCPQECWAMYGATVRRTIGLGDDQILFTGLAIGYADEDAAVNQWPVPRAPIDEAIDWKGFGT
>Mature_234_residues
PATDMPATDMSVTQALRRRRSVRAFTDRSVDPALLKEIFAAAQRAPSGGNLQPWQATVLTGEAWQAVRQAVAARIAMGRA
GQEPEYDIYPPALTAPWTDRRFGVGEALYASLGIPREDKRGRLAQFMDNYRGFGAPVMLFLHCSRIMGPPQWADMGMWLQ
SVMLMLVEQGLASCPQECWAMYGATVRRTIGLGDDQILFTGLAIGYADEDAAVNQWPVPRAPIDEAIDWKGFGT

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25909; Mature: 25778

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATDMPATDMSVTQALRRRRSVRAFTDRSVDPALLKEIFAAAQRAPSGGNLQPWQATVL
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
TGEAWQAVRQAVAARIAMGRAGQEPEYDIYPPALTAPWTDRRFGVGEALYASLGIPREDK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
RGRLAQFMDNYRGFGAPVMLFLHCSRIMGPPQWADMGMWLQSVMLMLVEQGLASCPQECW
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
AMYGATVRRTIGLGDDQILFTGLAIGYADEDAAVNQWPVPRAPIDEAIDWKGFGT
HHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
PATDMPATDMSVTQALRRRRSVRAFTDRSVDPALLKEIFAAAQRAPSGGNLQPWQATVL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEE
TGEAWQAVRQAVAARIAMGRAGQEPEYDIYPPALTAPWTDRRFGVGEALYASLGIPREDK
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
RGRLAQFMDNYRGFGAPVMLFLHCSRIMGPPQWADMGMWLQSVMLMLVEQGLASCPQECW
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
AMYGATVRRTIGLGDDQILFTGLAIGYADEDAAVNQWPVPRAPIDEAIDWKGFGT
HHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA