| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488408
Identifier: 103488408
GI number: 103488408
Start: 3075705
End: 3076955
Strand: Reverse
Name: 103488408
Synonym: Sala_2931
Alternate gene names: NA
Gene position: 3076955-3075705 (Counterclockwise)
Preceding gene: 103488409
Following gene: 103488407
Centisome position: 91.98
GC content: 73.54
Gene sequence:
>1251_bases ATGATGAACGCCCCCGCCCTTCCCGCGGCGTCCGGCGCGATGCCCGCAGGCTTTGCCGCCTTCCTCGCCAATATCGGGCA GGTTGCGCACGATGGCGACGCCGCCGGGTTCGGCCAGCTGCTTGCCGCAGCGCCGGTTCCGCTGCTCCCCACGGCAACGG GCGCGCCCGCCGCAGCGGCCGCCCCGCCCGCAACGGTGATCAAGACCGACGCGGTGCCGGTTGCCGACACCGGCCCCGAC GCCGCCGAGCTGCCCGTCGCACCGACGTCGGACACAGCCGCGGTTACGCTCGAAACATCGCCCGCCAAGTCCACCCCCGA CGCAGGCGATGCAGCCGCGCTCGCCGCGACCCTGCTCGTCGCGCTCAGTGGCGCGCGTACCGGCCCCGCGCATGGCGCGA ACAAGCCGACGGACACCGACACAGCGCCCGATGTCGAGCACCCCGGCGGGGCGCCCGCGGCACCTGCCATCGAAAACTGG GCGACGATCGTTGCCGCGGTCCTTCCCGACACCGCGCGCGCCGGCGAACCCAAGCCCGCGAAGCCCGAAACCGCCAAGCC GCACGCCGCCGCATCCGGTATCAACACGCCGGGCGCCGCTCCGGACAAAGCCGCTACCGATATGCGGGGACTGCTGCCCG GCATCCTCGCTGCCGCATCGCCGCCGACCCGCGACACGGTCATGTCCGCCCTTCCGCTTGCCTCCGACCCGCCCGTCGCC CGCGTGGCCGAGGCCGCCCCCGCGATGACGGTGTTGTTCACTCAGGCAGCAGCCCTCACCGCCGCCGCGCCGCTCGACGC CGCCGCCCCCGCGACGATCGCCGAGCGCGTGCTCGACATGGAGAGCGACGGCGCGTGGATCGATCAGCTGGCGCGCGACA TCGCCGCGACCAAATCGGACAGCGGCGACATCAGCTTTCGCCTGATGCCGCGCCACCTCGGCCGCCTCGACGTCGCGATG CGGATGGAGGGCGAGGGCATGTCGCTGAAGATGGATACCCAGCACGAAGCGACCGCGACGATCGTCACCGCCGCGCAGGG CCGCCTCGTCGACGAACTGCGCCAGCAGGGCGTGCGCGTCGTGGGCGCCGAAGTCACGCATACGCCGGGCGAGACCGGGC GCCAGTCGCAGGGCCAGAACCAGGGCCGCGCCGCCACACCCGACACCGCCCACCTCATCGAAACCGCCACCGAGCGCGCC GAGCAGCATGACGAGGAGCGCGCGGCGAACCGCCGCGGCCGCTTCGCCTGA
Upstream 100 bases:
>100_bases GCAAGTCGGCCGAAGCCGAGCAGGAACGCCGCAACGACGCCAACCGCCCGCACCGCCCGCGTGTCGGCATGCGGCTGCGC CTGATCGAAGGCGGCGCGGC
Downstream 100 bases:
>100_bases CCAGAAAGGGTTCCGCCATGACCAAGGACAAGACCGAAACCGAGCCCAAGAAGAAGGGCAAGTTCAAGAAGCTGCTGCTG GTTGGCGTGGCCGCGGTCGC
Product: flagellar hook-length control protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MMNAPALPAASGAMPAGFAAFLANIGQVAHDGDAAGFGQLLAAAPVPLLPTATGAPAAAAAPPATVIKTDAVPVADTGPD AAELPVAPTSDTAAVTLETSPAKSTPDAGDAAALAATLLVALSGARTGPAHGANKPTDTDTAPDVEHPGGAPAAPAIENW ATIVAAVLPDTARAGEPKPAKPETAKPHAAASGINTPGAAPDKAATDMRGLLPGILAAASPPTRDTVMSALPLASDPPVA RVAEAAPAMTVLFTQAAALTAAAPLDAAAPATIAERVLDMESDGAWIDQLARDIAATKSDSGDISFRLMPRHLGRLDVAM RMEGEGMSLKMDTQHEATATIVTAAQGRLVDELRQQGVRVVGAEVTHTPGETGRQSQGQNQGRAATPDTAHLIETATERA EQHDEERAANRRGRFA
Sequences:
>Translated_416_residues MMNAPALPAASGAMPAGFAAFLANIGQVAHDGDAAGFGQLLAAAPVPLLPTATGAPAAAAAPPATVIKTDAVPVADTGPD AAELPVAPTSDTAAVTLETSPAKSTPDAGDAAALAATLLVALSGARTGPAHGANKPTDTDTAPDVEHPGGAPAAPAIENW ATIVAAVLPDTARAGEPKPAKPETAKPHAAASGINTPGAAPDKAATDMRGLLPGILAAASPPTRDTVMSALPLASDPPVA RVAEAAPAMTVLFTQAAALTAAAPLDAAAPATIAERVLDMESDGAWIDQLARDIAATKSDSGDISFRLMPRHLGRLDVAM RMEGEGMSLKMDTQHEATATIVTAAQGRLVDELRQQGVRVVGAEVTHTPGETGRQSQGQNQGRAATPDTAHLIETATERA EQHDEERAANRRGRFA >Mature_416_residues MMNAPALPAASGAMPAGFAAFLANIGQVAHDGDAAGFGQLLAAAPVPLLPTATGAPAAAAAPPATVIKTDAVPVADTGPD AAELPVAPTSDTAAVTLETSPAKSTPDAGDAAALAATLLVALSGARTGPAHGANKPTDTDTAPDVEHPGGAPAAPAIENW ATIVAAVLPDTARAGEPKPAKPETAKPHAAASGINTPGAAPDKAATDMRGLLPGILAAASPPTRDTVMSALPLASDPPVA RVAEAAPAMTVLFTQAAALTAAAPLDAAAPATIAERVLDMESDGAWIDQLARDIAATKSDSGDISFRLMPRHLGRLDVAM RMEGEGMSLKMDTQHEATATIVTAAQGRLVDELRQQGVRVVGAEVTHTPGETGRQSQGQNQGRAATPDTAHLIETATERA EQHDEERAANRRGRFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41713; Mature: 41713
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNAPALPAASGAMPAGFAAFLANIGQVAHDGDAAGFGQLLAAAPVPLLPTATGAPAAAA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC APPATVIKTDAVPVADTGPDAAELPVAPTSDTAAVTLETSPAKSTPDAGDAAALAATLLV CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH ALSGARTGPAHGANKPTDTDTAPDVEHPGGAPAAPAIENWATIVAAVLPDTARAGEPKPA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCC KPETAKPHAAASGINTPGAAPDKAATDMRGLLPGILAAASPPTRDTVMSALPLASDPPVA CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHH RVAEAAPAMTVLFTQAAALTAAAPLDAAAPATIAERVLDMESDGAWIDQLARDIAATKSD HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC SGDISFRLMPRHLGRLDVAMRMEGEGMSLKMDTQHEATATIVTAAQGRLVDELRQQGVRV CCCEEEEECHHHCCCEEEEEEECCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHCCCEE VGAEVTHTPGETGRQSQGQNQGRAATPDTAHLIETATERAEQHDEERAANRRGRFA EECEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MMNAPALPAASGAMPAGFAAFLANIGQVAHDGDAAGFGQLLAAAPVPLLPTATGAPAAAA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC APPATVIKTDAVPVADTGPDAAELPVAPTSDTAAVTLETSPAKSTPDAGDAAALAATLLV CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH ALSGARTGPAHGANKPTDTDTAPDVEHPGGAPAAPAIENWATIVAAVLPDTARAGEPKPA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCC KPETAKPHAAASGINTPGAAPDKAATDMRGLLPGILAAASPPTRDTVMSALPLASDPPVA CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHH RVAEAAPAMTVLFTQAAALTAAAPLDAAAPATIAERVLDMESDGAWIDQLARDIAATKSD HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC SGDISFRLMPRHLGRLDVAMRMEGEGMSLKMDTQHEATATIVTAAQGRLVDELRQQGVRV CCCEEEEECHHHCCCEEEEEEECCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHCCCEE VGAEVTHTPGETGRQSQGQNQGRAATPDTAHLIETATERAEQHDEERAANRRGRFA EECEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA