| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488409
Identifier: 103488409
GI number: 103488409
Start: 3076952
End: 3077398
Strand: Reverse
Name: 103488409
Synonym: Sala_2932
Alternate gene names: NA
Gene position: 3077398-3076952 (Counterclockwise)
Preceding gene: 103488410
Following gene: 103488408
Centisome position: 92.0
GC content: 70.25
Gene sequence:
>447_bases ATGACCGCCCGCCCCGCACGCCGCAAACGCATCATCCGCGTGCGCTCCGTCGAACATCAGCTCGCCGAGGCCAATCTGGC CCGCGCCAATGGCGAACTTGCGAACCTCGTCGAGCTTGCGCGGCGGCTCGAAACGCTGCGCAGCGACCTCGCGATGGCGA AGGGCGCGGTCGCGGGCCGCGCGCTCAACACCATCGGCGAACTCGCGATGCGGCTCGACCTCGCGCAGGAGAATCTGGCC GCACCGCTTTGCAATGCGAGCGCGCGCCGCGACCAGATGGGGGCGCTGGCGCAGCGCGCGATGGCCAAGGAAGAATCGGC CGTGCGCCTTTACGAAAAGAGCCGCAAGTCGGCCGAAGCCGAGCAGGAACGCCGCAACGACGCCAACCGCCCGCACCGCC CGCGTGTCGGCATGCGGCTGCGCCTGATCGAAGGCGGCGCGGCATGA
Upstream 100 bases:
>100_bases TCGCGCGCCGCGCCGACCAGCTCGCCTTTGTTTCGCAACCTGCCAGGGCGCAGGTCGATTTCGACACCTCCCGCCAAACG CTGATCGAAGGATATTCCGC
Downstream 100 bases:
>100_bases TGAACGCCCCCGCCCTTCCCGCGGCGTCCGGCGCGATGCCCGCAGGCTTTGCCGCCTTCCTCGCCAATATCGGGCAGGTT GCGCACGATGGCGACGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MTARPARRKRIIRVRSVEHQLAEANLARANGELANLVELARRLETLRSDLAMAKGAVAGRALNTIGELAMRLDLAQENLA APLCNASARRDQMGALAQRAMAKEESAVRLYEKSRKSAEAEQERRNDANRPHRPRVGMRLRLIEGGAA
Sequences:
>Translated_148_residues MTARPARRKRIIRVRSVEHQLAEANLARANGELANLVELARRLETLRSDLAMAKGAVAGRALNTIGELAMRLDLAQENLA APLCNASARRDQMGALAQRAMAKEESAVRLYEKSRKSAEAEQERRNDANRPHRPRVGMRLRLIEGGAA >Mature_147_residues TARPARRKRIIRVRSVEHQLAEANLARANGELANLVELARRLETLRSDLAMAKGAVAGRALNTIGELAMRLDLAQENLAA PLCNASARRDQMGALAQRAMAKEESAVRLYEKSRKSAEAEQERRNDANRPHRPRVGMRLRLIEGGAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16373; Mature: 16242
Theoretical pI: Translated: 11.74; Mature: 11.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARPARRKRIIRVRSVEHQLAEANLARANGELANLVELARRLETLRSDLAMAKGAVAGR CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALNTIGELAMRLDLAQENLAAPLCNASARRDQMGALAQRAMAKEESAVRLYEKSRKSAEA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQERRNDANRPHRPRVGMRLRLIEGGAA HHHHHHCCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure TARPARRKRIIRVRSVEHQLAEANLARANGELANLVELARRLETLRSDLAMAKGAVAGR CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALNTIGELAMRLDLAQENLAAPLCNASARRDQMGALAQRAMAKEESAVRLYEKSRKSAEA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQERRNDANRPHRPRVGMRLRLIEGGAA HHHHHHCCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA