| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488407
Identifier: 103488407
GI number: 103488407
Start: 3075082
End: 3075687
Strand: Reverse
Name: 103488407
Synonym: Sala_2930
Alternate gene names: NA
Gene position: 3075687-3075082 (Counterclockwise)
Preceding gene: 103488408
Following gene: 103488406
Centisome position: 91.94
GC content: 59.74
Gene sequence:
>606_bases ATGACCAAGGACAAGACCGAAACCGAGCCCAAGAAGAAGGGCAAGTTCAAGAAGCTGCTGCTGGTTGGCGTGGCCGCGGT CGCGCTGATCGGCGCGGGCGCGGGCGCGGGCATCTATTTCGGTGCATTGTCGGCGCACGAGGCCAAGCCCGAGGATCATT ATCCCAAGCTCGTCCTTCGCAGCACCGATGCGCCCGAACCCGCCGCCGAGGGCGAAGACAAGGAAGCGCCGCTGAAGGTC GGCACCGTGTCGGTGCCCAACGACCGCTTCAAGGTCGATCCGCGCAAATATGAAATCACCTATTATCCGATCAGCGACAG TTTCACGACGAACCTCGCCGACGGATCGGGCTTCCTTCAGGTGGGTATCAGCCTTTCGACCTTCTATGACGGCAAGGTTA TCAATAATATCAAACGGCAGGCGGTGCCCATCCGCTCGGTCGTGCTTATGGTCCTCGCCGAACAGGATCCGGCCTCGCTC TCCACATCGCAGGGGAAACAGCGGCTGCAACGCCAGTTGACCGCCGCGATCAACGATGTGCTGCGCGAGAAGGAAGGATT TGGGGGTATCGACAATGTCTATTTCACGAGCCTGGTGATCCAGTGA
Upstream 100 bases:
>100_bases CCCACCTCATCGAAACCGCCACCGAGCGCGCCGAGCAGCATGACGAGGAGCGCGCGGCGAACCGCCGCGGCCGCTTCGCC TGACCAGAAAGGGTTCCGCC
Downstream 100 bases:
>100_bases CCGCCAGTGCCAAAAGCGTCAAGGCGGTGAAGGCCCCCGCCGCGCGCGCCGCCGAGCCTGCGGACGGCAAGGCATCGCTG CTGCTGCGCCGCGCCGCCGC
Product: flagellar basal body-associated protein FliL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MTKDKTETEPKKKGKFKKLLLVGVAAVALIGAGAGAGIYFGALSAHEAKPEDHYPKLVLRSTDAPEPAAEGEDKEAPLKV GTVSVPNDRFKVDPRKYEITYYPISDSFTTNLADGSGFLQVGISLSTFYDGKVINNIKRQAVPIRSVVLMVLAEQDPASL STSQGKQRLQRQLTAAINDVLREKEGFGGIDNVYFTSLVIQ
Sequences:
>Translated_201_residues MTKDKTETEPKKKGKFKKLLLVGVAAVALIGAGAGAGIYFGALSAHEAKPEDHYPKLVLRSTDAPEPAAEGEDKEAPLKV GTVSVPNDRFKVDPRKYEITYYPISDSFTTNLADGSGFLQVGISLSTFYDGKVINNIKRQAVPIRSVVLMVLAEQDPASL STSQGKQRLQRQLTAAINDVLREKEGFGGIDNVYFTSLVIQ >Mature_200_residues TKDKTETEPKKKGKFKKLLLVGVAAVALIGAGAGAGIYFGALSAHEAKPEDHYPKLVLRSTDAPEPAAEGEDKEAPLKVG TVSVPNDRFKVDPRKYEITYYPISDSFTTNLADGSGFLQVGISLSTFYDGKVINNIKRQAVPIRSVVLMVLAEQDPASLS TSQGKQRLQRQLTAAINDVLREKEGFGGIDNVYFTSLVIQ
Specific function: Unknown
COG id: COG1580
COG function: function code N; Flagellar basal body-associated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21772; Mature: 21641
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKDKTETEPKKKGKFKKLLLVGVAAVALIGAGAGAGIYFGALSAHEAKPEDHYPKLVLR CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEE STDAPEPAAEGEDKEAPLKVGTVSVPNDRFKVDPRKYEITYYPISDSFTTNLADGSGFLQ CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEEEEECCCCCCCCCCCCCCEEE VGISLSTFYDGKVINNIKRQAVPIRSVVLMVLAEQDPASLSTSQGKQRLQRQLTAAINDV EEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LREKEGFGGIDNVYFTSLVIQ HHHHCCCCCCCHHHHEEEECC >Mature Secondary Structure TKDKTETEPKKKGKFKKLLLVGVAAVALIGAGAGAGIYFGALSAHEAKPEDHYPKLVLR CCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEE STDAPEPAAEGEDKEAPLKVGTVSVPNDRFKVDPRKYEITYYPISDSFTTNLADGSGFLQ CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCEEEEEEEECCCCCCCCCCCCCCEEE VGISLSTFYDGKVINNIKRQAVPIRSVVLMVLAEQDPASLSTSQGKQRLQRQLTAAINDV EEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LREKEGFGGIDNVYFTSLVIQ HHHHCCCCCCCHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA