| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488272
Identifier: 103488272
GI number: 103488272
Start: 2959825
End: 2960355
Strand: Direct
Name: 103488272
Synonym: Sala_2795
Alternate gene names: NA
Gene position: 2959825-2960355 (Clockwise)
Preceding gene: 103488271
Following gene: 103488304
Centisome position: 88.48
GC content: 72.32
Gene sequence:
>531_bases TTGAGCGCCGCACCCGAGTTTTCGCTGGTCGTCACGCTCGCCGACGCAGCGCATGGCCGCGACATCGCGGTCGAGGCCGA CGCTGGCGCGCGCGCGCGGATCGCCGGGCGGCTCGGCCTGATCGCGCTCGATCATTTTGCGCTGACCGCCAGCCTGCGCG CCGTCGCCGGGGGCTTTGCGGCGACGGGCGAGATCAGGGCCAAGGTCGTGCAGGCGTGCGCCGCGACCGCGCTGCCCGTC CCCGCGGGCATCGCCGAGCGCTTCGACCTGCGCTTCCTGCGCGACGTCGATGCCCCGGTGGGCGAGGATGAAGAGATTGA AATCGGCCGCGACGAGCTCGACCTGCTGCCGCTCGAGGGCGACCGCGCCGATCTGGGCGAAGCCGCGGTGCAGACGCTGT CGCTCGCGCTCGACCCCTTTCCGCGCCATCGCGACGCCGACCGCATCCTTGGCGAAAAGGGCGTGCTCAGCGAGGAAGCG GCGGGGCCCTTCGCGGCGCTTGCCAAATTGCGCGGCAAACCCGGCGGTTAG
Upstream 100 bases:
>100_bases TGACGCATGTGATGGCCGCGGTAGCGGCGCTGCGCGGCGCGCTTGCCGCGATGCCGGTCGCCGAACTGGTCGCCACCGAC CGCCTGCCCGGAGCGCAAGG
Downstream 100 bases:
>100_bases AAACCGTCGCCCCCCGCGAAGGCGGGGGGCGACGGTCGCTTTCAAACGGTAATCGCTAACGGCGCTTGTCGGGCTTCGGC TTCGCGTCTTCCTCAACCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSAAPEFSLVVTLADAAHGRDIAVEADAGARARIAGRLGLIALDHFALTASLRAVAGGFAATGEIRAKVVQACAATALPV PAGIAERFDLRFLRDVDAPVGEDEEIEIGRDELDLLPLEGDRADLGEAAVQTLSLALDPFPRHRDADRILGEKGVLSEEA AGPFAALAKLRGKPGG
Sequences:
>Translated_176_residues MSAAPEFSLVVTLADAAHGRDIAVEADAGARARIAGRLGLIALDHFALTASLRAVAGGFAATGEIRAKVVQACAATALPV PAGIAERFDLRFLRDVDAPVGEDEEIEIGRDELDLLPLEGDRADLGEAAVQTLSLALDPFPRHRDADRILGEKGVLSEEA AGPFAALAKLRGKPGG >Mature_175_residues SAAPEFSLVVTLADAAHGRDIAVEADAGARARIAGRLGLIALDHFALTASLRAVAGGFAATGEIRAKVVQACAATALPVP AGIAERFDLRFLRDVDAPVGEDEEIEIGRDELDLLPLEGDRADLGEAAVQTLSLALDPFPRHRDADRILGEKGVLSEEAA GPFAALAKLRGKPGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18226; Mature: 18095
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPEFSLVVTLADAAHGRDIAVEADAGARARIAGRLGLIALDHFALTASLRAVAGGFA CCCCCCEEEEEEEECCCCCCEEEEECCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCC ATGEIRAKVVQACAATALPVPAGIAERFDLRFLRDVDAPVGEDEEIEIGRDELDLLPLEG CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCC DRADLGEAAVQTLSLALDPFPRHRDADRILGEKGVLSEEAAGPFAALAKLRGKPGG CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure SAAPEFSLVVTLADAAHGRDIAVEADAGARARIAGRLGLIALDHFALTASLRAVAGGFA CCCCCEEEEEEEECCCCCCEEEEECCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCC ATGEIRAKVVQACAATALPVPAGIAERFDLRFLRDVDAPVGEDEEIEIGRDELDLLPLEG CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCC DRADLGEAAVQTLSLALDPFPRHRDADRILGEKGVLSEEAAGPFAALAKLRGKPGG CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA