| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488304
Identifier: 103488304
GI number: 103488304
Start: 2983598
End: 2984311
Strand: Direct
Name: 103488304
Synonym: Sala_2827
Alternate gene names: NA
Gene position: 2983598-2984311 (Clockwise)
Preceding gene: 103488272
Following gene: 103488305
Centisome position: 89.19
GC content: 65.13
Gene sequence:
>714_bases TTGCCCCTCCTCCTTCCACCCCCTATGCGCCGCCCCATGCCGCCGCCGCTCGACCCTATCGACAGCTGGATCTTCGATCT CGACAACACGCTCTATCCGCCTTCGGCAAAGCTGTTCGACCTGATCGACGAACGCATGGGCGCGTTCATCATGCGGTTGC TGGGTGTCGACGCGATCGAGGCGCGGCGTGTGCAGAAGCGATATTTCCACGACCATGGCACGACGATGGCGGGGCTGATG CGCCATCACGGCGTCGATCCCGAAGAGTTTCTGCGCGACGTCCACGCGATCGACCTCGACCGGCTGACCCCCGACCCGCG GCTGCGCGCCGGGCTCGAACGGCTGCCGGGACGCAGGCTGGTCTTCACCAACGCCGACGCCGATTATGCGGCGCGCGTGC TCGAAGCGCGCGGGATCGCCGACCTGTTCGACGGCATCTGCGACATTCGCATCACCCGCTACACGCCCAAGCCGGAGGCA ACCGCCTATGATGTGATGGTCGCGCACCTCGGCGTCGATCCGGTGCGGAGCCTGTTCGTCGAGGATATGGCGCGCAACCT GACGCCTGCAAAAGCGCTCGGCATGACGACCGTGTGGCTGGACAATGGCAGCGAAAGCGGCCATCGGGACCACCTGCCCG ACCATGTCGATTTCCACGCGACCGACATTGCCGACTGGCTCGACAACCTGCCTTCACCATGGGGAATCGCATGA
Upstream 100 bases:
>100_bases CTCGCCCTGAGCAAAATCGCTTCAAACCTCGAACAGGTAATTAATGAGTCCTGACCCTAACCCATAGAGGTTGCCGTCCC GTAAAACGGACGGGACGGCC
Downstream 100 bases:
>100_bases CCGCCGACCTTCAAGCCACGATCGAAGCCGCATGGGACGCGCGCGACACATTGGGCCTCGCCACGACCGGTGCGGTGCGC GAGGCGGTCGATACCGCGAT
Product: pyrimidine 5-nucleotidase
Products: NA
Alternate protein names: Hydrolase; HAD-Superfamily Hydrolase; HAD Family Pyrimidine 5-Nucleotidase; HAD Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; HAD Family Hydrolase; Phosphatase; Hydrolase Protein; HAD Superfamily Protein; Haloacid Dehalogenase Superfamily Hydrolase; Haloacid Dehalogenase; Phosphoglycolate Phosphatase; Hydrolase Ripening-Related Protein-Like; Haloacid Dehalogenase-Like Hydrolase Family Protein; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLM RHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEA TAYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA
Sequences:
>Translated_237_residues MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLM RHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEA TAYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA >Mature_236_residues PLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLMR HHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEAT AYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321214, Length=195, Percent_Identity=31.7948717948718, Blast_Score=82, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6320875, Length=219, Percent_Identity=28.310502283105, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26772; Mature: 26641
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIE CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH ARRVQKRYFHDHGTTMAGLMRHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRL HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE VFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEATAYDVMVAHLGVDPVRSLFV EEECCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHH EDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA HHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIE CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH ARRVQKRYFHDHGTTMAGLMRHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRL HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE VFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEATAYDVMVAHLGVDPVRSLFV EEECCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHH EDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA HHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA