| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is btuB [H]
Identifier: 103488010
GI number: 103488010
Start: 2666644
End: 2669175
Strand: Direct
Name: btuB [H]
Synonym: Sala_2531
Alternate gene names: 103488010
Gene position: 2666644-2669175 (Clockwise)
Preceding gene: 103488009
Following gene: 103488011
Centisome position: 79.72
GC content: 64.42
Gene sequence:
>2532_bases ATGTCGATGAAATCCCGTTCGCTGGCCGCACTGCTCGTCGGCACAGCAGCCTTGCTTTCGCCCGAAGGCGCGCAGGCCAT GCAGGCGCCGCGCCAATCCTATGATATTCCGGCGCAGGATCTGGGCGACGCTCTGCGCCGTGCCGCCGCGCTCGCCGATA TCGAGCTCTATGTCAGCGCGCAGGACATCGAAGGGAAGAGGGCGCCCGCCGTGCGGGGTCAGCTCACGCCGCGCGAAGCC ATCGAGGCGCTTCTCGCCGGCAGCGGCCTCACGGCGCGTTTCGAGAGCCGGTCGGTCATTATCCTGAGCGACGCCGCCGT TCCGGCCATCCCCGCGGGCGAGCCCGAAGTCATCATCGTCACCGGGTCGCGCATCGCGGGCGCTCCTGCCGCCGCGCCGG TTATCGACATCAGTGCCGAGGATATTCGCAACGCGGGTCATGCCGACCTCGGCGAGGTGGCGCGAAACCTGCCCCAGAAT TTCGGCGGCGGGCAGAATCCCGGGATCGGGTCGGGTCAGGGCGTCGCGAACGAGAATGGAAACGTCAATGGGGCCTCGAC CTTCAACCTCAGGGGGATAGGGCCGAGTGCAACGCTGACGCTGCTCAATGGCAATCGCTTTGCCTACAGCGGCACGCAAA GCGCCATCGACGTGAGTGCGATTCCGGCAGCGGCGGTCGAACGGATCGAGATCGTCACCGACGGCGCGTCGGCGATCTAC GGCGCCGACGCGGTGGCGGGCGTGGTCAATATCCTGCTGCGCAAGGATTATGAAGGAATCACGACGAGTGCCCGGCTCGG CGGATCGACCGACGGGGGCAATTTTCAGCAGCAATATGGGCTGCTCGGGGGCGCAAAATGGTCCGGTGGCGGCTTCCTTG CGGCCTATGACTATTTCGAGAATAGCGCGATCCTTGCGCGCAATCGCAGCTATGCAGCGAGCAGCAACCCCGCCTCGACA CTCTACCCGGAGCTCAAGCGGCATAGTTTTCTGCTGAGCGCTCATCAGCAGGTGGTTGCCGGCGTACAGTTGAAGACCGA CGCGATCTACAAGCGCGGCGATATGACTTCGGTGCGCGGTCTTATCGTGGACCGTCCGATCACGACGCGCGGTACGATTG TCACCAATGAGTTCGAAACGTTCGGGATCGCCCCAACGCTCGAGGCCGAGATCGGCGGCAGTTGGAACGCGCGTATCTCC GCTTTCTACGGCAGCGATGATACCTATGGCGAGACGCAGAATTTCACCAACGGTGTGGCGACGCGCCCCATTCGCATATT CAACAATCGCAGTGTCAGCGTCGAAGCCGGTGTGGAGGGCGCGATCTTCGCGCTACCCGCCGGCGATGTGCGGCTCGCCG CCGGCGGCGGCTGGCGTCGCAACCGGCTCGTCGCAGAGGTCAACGGCCGTGGTTTCACCGGACGCCGCGACAATCTCTAT GCCTATGGCGAGCTCTTCCTGCCGCTGGCCAGCCCTGCACAGGACCTCGCCTTCCTGCACCGCGCGTCGATCACCGCAGC GCTGCGCTTCGAGGATTATTCGGATGCCGGGAGCATCGTGATTCCGAAGCTCGGCTTCGTCTATGCGCCGGCTGCGGAAC TGAGCATCGGCCTGTCGTGGGGCCGGTCCTTCAAGATGCCGACGCTCAACCAGCAGTTCAGCGGCTACACGCCGGTGCTG CTGCCTGTGACCGGCTACGGTACGATGTTCCCGGCGGGTTCGACCTACATCTATCTCGGCGGCCGAAATCCGGACGTCGG TCCCGAGCGATCCGAGAATATCACCCTGAGCGCGACCTTCCGGCCGTCACCCCGGCTTCAGATCGTCACCAGCCTGTTCC GGATCGATTATCGCGACAGGGTTGCGCCGCCCTTCGGCTCGCCGCTCGGAACGCTGAGCAATCCGCTCTACGCCGATTTC ATCACCTTCAACCCGTCGGCCGTGTTGCAGGCCGAGGCGATCGCCGGCGCGGCCGATCCCCTCGGGAACGGAACGAGCGG CCCATATAGTCCTGCCACGGTGATTGCGATCATCGACGGCCGCGACCGGAATATCGCCGCGCAGCGCTATGAAGGCGCCG ATCTGGCGATCCGCTACCGGGCTCCGCTTGGCAAGCAGACGGTGACGCTCACCGCCAATGCCACCTGGCTCGACAGCCGG CAGCGACTGCTACCCGGCCTTCCGAACATCGATCTGGCCGGCACGATATTCAATTCGCCGCACTTTCGCGCCAGGGGCGG CGCGACCTTCGGTGACGAGCGCTTCACACTGGCGGCCTTCGCCAATTTCACGGGCGGCGTAACCGATCGGCGGCGCGCCG TGCCGGTGAGTGTCTCACCCGTCACGATGTTCGATCTCTCCGCACGCGTGAAGCTTGGGCGCCTTGCCGAAATATCGGTC AATGCGCTCAATATCCTCAATGCCAAGCCGGATATGACTGCAGTCGCGTCCGCTAGCGACACGCCTTTCGATACTACCAA CTATTCGGCTGTCGGGCGTTTCCTCGGCGTCACGATCAGCCGCGACTGGTGA
Upstream 100 bases:
>100_bases AATTTTTTACCGAGCGACTAAGGTCGCTCCTATCTTCCCGTCATCGCACCCCCACTGGCCGTCTGCCTGATGCACGGCCG AGAATATTGGGGGAGTGAAA
Downstream 100 bases:
>100_bases GGAGCGCCGATATGAAAATCGCACTCCGATCCGGCCTCCCGGCCGTGGCGCTCCTTGCCGCCGCGGCGCTCTCCCCTGCC GCGCAGGCAGGGGAGAGCAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 843; Mature: 842
Protein sequence:
>843_residues MSMKSRSLAALLVGTAALLSPEGAQAMQAPRQSYDIPAQDLGDALRRAAALADIELYVSAQDIEGKRAPAVRGQLTPREA IEALLAGSGLTARFESRSVIILSDAAVPAIPAGEPEVIIVTGSRIAGAPAAAPVIDISAEDIRNAGHADLGEVARNLPQN FGGGQNPGIGSGQGVANENGNVNGASTFNLRGIGPSATLTLLNGNRFAYSGTQSAIDVSAIPAAAVERIEIVTDGASAIY GADAVAGVVNILLRKDYEGITTSARLGGSTDGGNFQQQYGLLGGAKWSGGGFLAAYDYFENSAILARNRSYAASSNPAST LYPELKRHSFLLSAHQQVVAGVQLKTDAIYKRGDMTSVRGLIVDRPITTRGTIVTNEFETFGIAPTLEAEIGGSWNARIS AFYGSDDTYGETQNFTNGVATRPIRIFNNRSVSVEAGVEGAIFALPAGDVRLAAGGGWRRNRLVAEVNGRGFTGRRDNLY AYGELFLPLASPAQDLAFLHRASITAALRFEDYSDAGSIVIPKLGFVYAPAAELSIGLSWGRSFKMPTLNQQFSGYTPVL LPVTGYGTMFPAGSTYIYLGGRNPDVGPERSENITLSATFRPSPRLQIVTSLFRIDYRDRVAPPFGSPLGTLSNPLYADF ITFNPSAVLQAEAIAGAADPLGNGTSGPYSPATVIAIIDGRDRNIAAQRYEGADLAIRYRAPLGKQTVTLTANATWLDSR QRLLPGLPNIDLAGTIFNSPHFRARGGATFGDERFTLAAFANFTGGVTDRRRAVPVSVSPVTMFDLSARVKLGRLAEISV NALNILNAKPDMTAVASASDTPFDTTNYSAVGRFLGVTISRDW
Sequences:
>Translated_843_residues MSMKSRSLAALLVGTAALLSPEGAQAMQAPRQSYDIPAQDLGDALRRAAALADIELYVSAQDIEGKRAPAVRGQLTPREA IEALLAGSGLTARFESRSVIILSDAAVPAIPAGEPEVIIVTGSRIAGAPAAAPVIDISAEDIRNAGHADLGEVARNLPQN FGGGQNPGIGSGQGVANENGNVNGASTFNLRGIGPSATLTLLNGNRFAYSGTQSAIDVSAIPAAAVERIEIVTDGASAIY GADAVAGVVNILLRKDYEGITTSARLGGSTDGGNFQQQYGLLGGAKWSGGGFLAAYDYFENSAILARNRSYAASSNPAST LYPELKRHSFLLSAHQQVVAGVQLKTDAIYKRGDMTSVRGLIVDRPITTRGTIVTNEFETFGIAPTLEAEIGGSWNARIS AFYGSDDTYGETQNFTNGVATRPIRIFNNRSVSVEAGVEGAIFALPAGDVRLAAGGGWRRNRLVAEVNGRGFTGRRDNLY AYGELFLPLASPAQDLAFLHRASITAALRFEDYSDAGSIVIPKLGFVYAPAAELSIGLSWGRSFKMPTLNQQFSGYTPVL LPVTGYGTMFPAGSTYIYLGGRNPDVGPERSENITLSATFRPSPRLQIVTSLFRIDYRDRVAPPFGSPLGTLSNPLYADF ITFNPSAVLQAEAIAGAADPLGNGTSGPYSPATVIAIIDGRDRNIAAQRYEGADLAIRYRAPLGKQTVTLTANATWLDSR QRLLPGLPNIDLAGTIFNSPHFRARGGATFGDERFTLAAFANFTGGVTDRRRAVPVSVSPVTMFDLSARVKLGRLAEISV NALNILNAKPDMTAVASASDTPFDTTNYSAVGRFLGVTISRDW >Mature_842_residues SMKSRSLAALLVGTAALLSPEGAQAMQAPRQSYDIPAQDLGDALRRAAALADIELYVSAQDIEGKRAPAVRGQLTPREAI EALLAGSGLTARFESRSVIILSDAAVPAIPAGEPEVIIVTGSRIAGAPAAAPVIDISAEDIRNAGHADLGEVARNLPQNF GGGQNPGIGSGQGVANENGNVNGASTFNLRGIGPSATLTLLNGNRFAYSGTQSAIDVSAIPAAAVERIEIVTDGASAIYG ADAVAGVVNILLRKDYEGITTSARLGGSTDGGNFQQQYGLLGGAKWSGGGFLAAYDYFENSAILARNRSYAASSNPASTL YPELKRHSFLLSAHQQVVAGVQLKTDAIYKRGDMTSVRGLIVDRPITTRGTIVTNEFETFGIAPTLEAEIGGSWNARISA FYGSDDTYGETQNFTNGVATRPIRIFNNRSVSVEAGVEGAIFALPAGDVRLAAGGGWRRNRLVAEVNGRGFTGRRDNLYA YGELFLPLASPAQDLAFLHRASITAALRFEDYSDAGSIVIPKLGFVYAPAAELSIGLSWGRSFKMPTLNQQFSGYTPVLL PVTGYGTMFPAGSTYIYLGGRNPDVGPERSENITLSATFRPSPRLQIVTSLFRIDYRDRVAPPFGSPLGTLSNPLYADFI TFNPSAVLQAEAIAGAADPLGNGTSGPYSPATVIAIIDGRDRNIAAQRYEGADLAIRYRAPLGKQTVTLTANATWLDSRQ RLLPGLPNIDLAGTIFNSPHFRARGGATFGDERFTLAAFANFTGGVTDRRRAVPVSVSPVTMFDLSARVKLGRLAEISVN ALNILNAKPDMTAVASASDTPFDTTNYSAVGRFLGVTISRDW
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=177, Percent_Identity=29.3785310734463, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1788478, Length=147, Percent_Identity=31.9727891156463, Blast_Score=67, Evalue=7e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 88917; Mature: 88786
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMKSRSLAALLVGTAALLSPEGAQAMQAPRQSYDIPAQDLGDALRRAAALADIELYVSA CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHHEEEEEEEEE QDIEGKRAPAVRGQLTPREAIEALLAGSGLTARFESRSVIILSDAAVPAIPAGEPEVIIV ECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEEEE TGSRIAGAPAAAPVIDISAEDIRNAGHADLGEVARNLPQNFGGGQNPGIGSGQGVANENG ECCCCCCCCCCCCEEECCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC NVNGASTFNLRGIGPSATLTLLNGNRFAYSGTQSAIDVSAIPAAAVERIEIVTDGASAIY CCCCCEEEEEECCCCCEEEEEEECCEEEECCCCCCEEEECCCHHHHEEEEEEECCCHHHH GADAVAGVVNILLRKDYEGITTSARLGGSTDGGNFQQQYGLLGGAKWSGGGFLAAYDYFE CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCEECCCCEEEEEEECC NSAILARNRSYAASSNPASTLYPELKRHSFLLSAHQQVVAGVQLKTDAIYKRGDMTSVRG CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHEECCCCCCCCE LIVDRPITTRGTIVTNEFETFGIAPTLEAEIGGSWNARISAFYGSDDTYGETQNFTNGVA EEECCCCCCCCCEEECCCHHCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC TRPIRIFNNRSVSVEAGVEGAIFALPAGDVRLAAGGGWRRNRLVAEVNGRGFTGRRDNLY CCCEEEECCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEE AYGELFLPLASPAQDLAFLHRASITAALRFEDYSDAGSIVIPKLGFVYAPAAELSIGLSW EEEEEEEECCCCHHHHHHHHHHCEEEEEEECCCCCCCCEEEECCCEEECCHHHEEEEECC GRSFKMPTLNQQFSGYTPVLLPVTGYGTMFPAGSTYIYLGGRNPDVGPERSENITLSATF CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE RPSPRLQIVTSLFRIDYRDRVAPPFGSPLGTLSNPLYADFITFNPSAVLQAEAIAGAADP CCCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHCCCCEEEEEEECCCCEEEEHHHCCCCCC LGNGTSGPYSPATVIAIIDGRDRNIAAQRYEGADLAIRYRAPLGKQTVTLTANATWLDSR CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCEEECCH QRLLPGLPNIDLAGTIFNSPHFRARGGATFGDERFTLAAFANFTGGVTDRRRAVPVSVSP HHHCCCCCCCCEEEEEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCC VTMFDLSARVKLGRLAEISVNALNILNAKPDMTAVASASDTPFDTTNYSAVGRFLGVTIS EEEEECCCCEEECEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHEEEEEEE RDW CCC >Mature Secondary Structure SMKSRSLAALLVGTAALLSPEGAQAMQAPRQSYDIPAQDLGDALRRAAALADIELYVSA CCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHHEEEEEEEEE QDIEGKRAPAVRGQLTPREAIEALLAGSGLTARFESRSVIILSDAAVPAIPAGEPEVIIV ECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEEEE TGSRIAGAPAAAPVIDISAEDIRNAGHADLGEVARNLPQNFGGGQNPGIGSGQGVANENG ECCCCCCCCCCCCEEECCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC NVNGASTFNLRGIGPSATLTLLNGNRFAYSGTQSAIDVSAIPAAAVERIEIVTDGASAIY CCCCCEEEEEECCCCCEEEEEEECCEEEECCCCCCEEEECCCHHHHEEEEEEECCCHHHH GADAVAGVVNILLRKDYEGITTSARLGGSTDGGNFQQQYGLLGGAKWSGGGFLAAYDYFE CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCEECCCCEEEEEEECC NSAILARNRSYAASSNPASTLYPELKRHSFLLSAHQQVVAGVQLKTDAIYKRGDMTSVRG CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHEECCCCCCCCE LIVDRPITTRGTIVTNEFETFGIAPTLEAEIGGSWNARISAFYGSDDTYGETQNFTNGVA EEECCCCCCCCCEEECCCHHCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC TRPIRIFNNRSVSVEAGVEGAIFALPAGDVRLAAGGGWRRNRLVAEVNGRGFTGRRDNLY CCCEEEECCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEE AYGELFLPLASPAQDLAFLHRASITAALRFEDYSDAGSIVIPKLGFVYAPAAELSIGLSW EEEEEEEECCCCHHHHHHHHHHCEEEEEEECCCCCCCCEEEECCCEEECCHHHEEEEECC GRSFKMPTLNQQFSGYTPVLLPVTGYGTMFPAGSTYIYLGGRNPDVGPERSENITLSATF CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE RPSPRLQIVTSLFRIDYRDRVAPPFGSPLGTLSNPLYADFITFNPSAVLQAEAIAGAADP CCCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHCCCCEEEEEEECCCCEEEEHHHCCCCCC LGNGTSGPYSPATVIAIIDGRDRNIAAQRYEGADLAIRYRAPLGKQTVTLTANATWLDSR CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCEEECCH QRLLPGLPNIDLAGTIFNSPHFRARGGATFGDERFTLAAFANFTGGVTDRRRAVPVSVSP HHHCCCCCCCCEEEEEECCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCC VTMFDLSARVKLGRLAEISVNALNILNAKPDMTAVASASDTPFDTTNYSAVGRFLGVTIS EEEEECCCCEEECEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHEEEEEEE RDW CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA