| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488011
Identifier: 103488011
GI number: 103488011
Start: 2669187
End: 2671367
Strand: Direct
Name: 103488011
Synonym: Sala_2532
Alternate gene names: NA
Gene position: 2669187-2671367 (Clockwise)
Preceding gene: 103488010
Following gene: 103488014
Centisome position: 79.79
GC content: 61.71
Gene sequence:
>2181_bases ATGAAAATCGCACTCCGATCCGGCCTCCCGGCCGTGGCGCTCCTTGCCGCCGCGGCGCTCTCCCCTGCCGCGCAGGCAGG GGAGAGCAAGGGCAGGCCCTGGACGCTCGAGGATATCCTCACAGTTCCCGAAGTGAATGAAATCGCGCTGTCGGACAATG GCCGCCTCGCGATTTACGCTGCCGAGATTGCCGACCTCGATGCCGGAAAGCCGAGATCGCATATTCGCATCGTGGACGTC GAAACTGGTCGGACGAAGGAATTGCTGACGGTCGATACCATCAAGTCGCTGCGATCCGTCCCCGGGACACAAGACTGGAG CGCTTTGGTAGACCTTGGCGAAGGCCAGCAACTCTACCGGATCGACACCGAGGGCAAGCTGCTGCCACTGATCGTGAACC CCAACCCCGTGCCGGTGGGAAAGGCCGACATGTCTTTCCCGCTCGGCGGCGGCATACGCCCCTCGCATATCGGTATCCTC GACTATGACTGGTCACCCGATGGCAAATGGCTTTGGTATTCACAGCTCAGGGCCAAGTCCGACGGACCTCGTGTCCGGTT CGATGAGGAAGTGACCGCCCTACTTGGCCGGAGACGGTCAACGATCGACGTCGAAGTCGACTTTTTTCTTCGGAATCCTG AGGGAGACACGACGAGGATCATGGCGCGCCCATCGACAGATCGCGTCGCCACCCGTGGTGGGGGGCGCGTTCTGTGGCGC GGCAATGAAGTCCAGTTTCGGATCGAGACGAGCGACGGCACTTTGGGCGGTGCCTTCGAATTCGTGGCGTGGAACCGCGT CAACAGGACGGTGCGCACGCTCGCGAAACAACGCGACTTGCTCAGCATGTCGATTCTCGTCGGCCCGCGCGGTGGGCAGC TTTCGACAAGCGGTCTGGGCAGCGATCGGGAGTTGATCGAGACCTCGGCAGAAGGTCGACCACACAGCTATGGTCGTGTC GCATTCGACATCGGCGATTCTCGTTCGGCTGGCTGGAAACGTAGCCGCGATGGCAAACGGGTGGTGATCGGGACCAGGGG GCTCGGCGACGCGCGCTATGGTCTCGCGCTCATCGATAAAACAGGGGTGCGTGAACTCCGCGCGGACGCGAGCCTTACGC GATGCGGCTTCGACGGCATGCTCCGGTCTGCCATTTGCGTCGAGGAAGGCATGTCCCGGCCGCCGCGCCTCGTTCGCGTG GATCTCGGCACAGATAAGATCACAGACCTTGGTCCCATCTCACCAAGACATGAGGAGATCGAACCTCTTCAGACAATTGC ACGCACCTTTGTCAGTCGCGACGGCTATTGGTCGAGCGGCTATGTCTTGCTCCCGCGCGGCCACCGTGCCGCCGACCGAC ACCCAGCGGTGGTCGTGACCCACGGCACCGATGCAGACGACCGCTTTGCCGAGCCCGCAAACCAGTGGAACTATCCAGTC CAGCTGCTTGCTGAACGCGGTTATGTGGTTCTTCTCCTCAACGACCCCTCACCCGGCCAGTCGAAGGATTTGATGGACGC CATGCACGCCTGGCTACGCGGTAAAGGTCCCCCCGATCCTGAAACGGTTCAACAAAAACTCTGGCTGACCGGCGTGCACA GCTTCGAGGATGCCGTGACGGAACTTGCCGCCGAGGGGCTGATCGATCCGGCCCGCGTCGGCATCGCCGGCTACAGTCGC GGCTCCCAAATGGTCAACGTTACCGTGACCAACTCAAAAATGTTTCGCGCGGCCTCGAGCGGCGATGGCGGCTTTCTGGA ACCCGCCGGCTATGCAACGGGGCGCTCCAGTTATGATGCGGTCTATGGCGGTGCCCCGCTCAGCGACAATATCGAACGCT GGCGCCGATTTGCGCCGTCGCTGAATGCCGACAAAGTCTGTGCCGCGGTGTTGCAGCAAGTGGCTTCGGCATCGCCGTCA CAGATCGAACTGTTCGAGGCTTTGCGTGCGGCGGGCGTGGCAACCCAGATCAGCTACTATCCGGGAGCAACAGCGGCGTC CGACGAGACGCATGTCTTCTACCTGACAACCAACCGATTGCGCGCGATGCGCGAAAACATTGCGTGGTTCGACTATTGGC TGCTCGACAAGCGGGACGCCGATGCGCCTTTCCCAGATCATGTGGTGAAATGGGATCGCTTGAAGAAGAACTTGCCAGAT CGCTGCGCCGCCGCGCCTTGA
Upstream 100 bases:
>100_bases TCGCGTCCGCTAGCGACACGCCTTTCGATACTACCAACTATTCGGCTGTCGGGCGTTTCCTCGGCGTCACGATCAGCCGC GACTGGTGAGGAGCGCCGAT
Downstream 100 bases:
>100_bases TCCGTGCTCAATCGTATTCGCCGATTCCTGCGAAGGGTATGTAGCGCGAGCCGGTGTCTTCCTCGACGGGGCCGACCGGT TCCAAACCGCGCGTCTGCGC
Product: dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
Products: NA
Alternate protein names: Prolyl Oligopeptidase Family Protein; Peptidase S9 Prolyl Oligopeptidase; Peptidase S9 Prolyl Oligopeptidase Active Site Region; X-Pro Dipeptidyl-Peptidase
Number of amino acids: Translated: 726; Mature: 726
Protein sequence:
>726_residues MKIALRSGLPAVALLAAAALSPAAQAGESKGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIVDV ETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLLPLIVNPNPVPVGKADMSFPLGGGIRPSHIGIL DYDWSPDGKWLWYSQLRAKSDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRVATRGGGRVLWR GNEVQFRIETSDGTLGGAFEFVAWNRVNRTVRTLAKQRDLLSMSILVGPRGGQLSTSGLGSDRELIETSAEGRPHSYGRV AFDIGDSRSAGWKRSRDGKRVVIGTRGLGDARYGLALIDKTGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPRLVRV DLGTDKITDLGPISPRHEEIEPLQTIARTFVSRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPV QLLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVTELAAEGLIDPARVGIAGYSR GSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRSSYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPS QIELFEALRAAGVATQISYYPGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPD RCAAAP
Sequences:
>Translated_726_residues MKIALRSGLPAVALLAAAALSPAAQAGESKGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIVDV ETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLLPLIVNPNPVPVGKADMSFPLGGGIRPSHIGIL DYDWSPDGKWLWYSQLRAKSDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRVATRGGGRVLWR GNEVQFRIETSDGTLGGAFEFVAWNRVNRTVRTLAKQRDLLSMSILVGPRGGQLSTSGLGSDRELIETSAEGRPHSYGRV AFDIGDSRSAGWKRSRDGKRVVIGTRGLGDARYGLALIDKTGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPRLVRV DLGTDKITDLGPISPRHEEIEPLQTIARTFVSRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPV QLLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVTELAAEGLIDPARVGIAGYSR GSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRSSYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPS QIELFEALRAAGVATQISYYPGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPD RCAAAP >Mature_726_residues MKIALRSGLPAVALLAAAALSPAAQAGESKGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIVDV ETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLLPLIVNPNPVPVGKADMSFPLGGGIRPSHIGIL DYDWSPDGKWLWYSQLRAKSDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRVATRGGGRVLWR GNEVQFRIETSDGTLGGAFEFVAWNRVNRTVRTLAKQRDLLSMSILVGPRGGQLSTSGLGSDRELIETSAEGRPHSYGRV AFDIGDSRSAGWKRSRDGKRVVIGTRGLGDARYGLALIDKTGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPRLVRV DLGTDKITDLGPISPRHEEIEPLQTIARTFVSRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPV QLLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVTELAAEGLIDPARVGIAGYSR GSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRSSYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPS QIELFEALRAAGVATQISYYPGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPD RCAAAP
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79418; Mature: 79418
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIALRSGLPAVALLAAAALSPAAQAGESKGRPWTLEDILTVPEVNEIALSDNGRLAIYA CEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCEEHHHHCCCCCCCEEEECCCCEEEEEE AEIADLDAGKPRSHIRIVDVETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYR EEECCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCCCEEEE IDTEGKLLPLIVNPNPVPVGKADMSFPLGGGIRPSHIGILDYDWSPDGKWLWYSQLRAKS ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHHHCCC DGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRVATRGGGRVLWR CCCCEEECHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCEECCCCEEEEE GNEVQFRIETSDGTLGGAFEFVAWNRVNRTVRTLAKQRDLLSMSILVGPRGGQLSTSGLG CCEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCC SDRELIETSAEGRPHSYGRVAFDIGDSRSAGWKRSRDGKRVVIGTRGLGDARYGLALIDK CCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECC TGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPRLVRVDLGTDKITDLGPISPRHEEI CCHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHH EPLQTIARTFVSRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPV HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHCCCHHCCCCCH QLLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVT HEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH ELAAEGLIDPARVGIAGYSRGSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRSSYDA HHHHHCCCCHHHCCEEECCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCE VYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPSQIELFEALRAAGVATQISYY EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEC PGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPD CCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCC RCAAAP HHCCCC >Mature Secondary Structure MKIALRSGLPAVALLAAAALSPAAQAGESKGRPWTLEDILTVPEVNEIALSDNGRLAIYA CEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCEEHHHHCCCCCCCEEEECCCCEEEEEE AEIADLDAGKPRSHIRIVDVETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYR EEECCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCCCEEEE IDTEGKLLPLIVNPNPVPVGKADMSFPLGGGIRPSHIGILDYDWSPDGKWLWYSQLRAKS ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHHHCCC DGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRVATRGGGRVLWR CCCCEEECHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCEECCCCEEEEE GNEVQFRIETSDGTLGGAFEFVAWNRVNRTVRTLAKQRDLLSMSILVGPRGGQLSTSGLG CCEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCC SDRELIETSAEGRPHSYGRVAFDIGDSRSAGWKRSRDGKRVVIGTRGLGDARYGLALIDK CCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECC TGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPRLVRVDLGTDKITDLGPISPRHEEI CCHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHH EPLQTIARTFVSRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPV HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHCCCHHCCCCCH QLLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVT HEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH ELAAEGLIDPARVGIAGYSRGSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRSSYDA HHHHHCCCCHHHCCEEECCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCE VYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPSQIELFEALRAAGVATQISYY EECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEC PGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPD CCCCCCCCCCEEEEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCC RCAAAP HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA