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The map label for this gene is yhdX [H]

Identifier: 103487894

GI number: 103487894

Start: 2549754

End: 2551946

Strand: Reverse

Name: yhdX [H]

Synonym: Sala_2414

Alternate gene names: 103487894

Gene position: 2551946-2549754 (Counterclockwise)

Preceding gene: 103487895

Following gene: 103487893

Centisome position: 76.29

GC content: 64.43

Gene sequence:

>2193_bases
ATGACTCATAAACACAGGCGGCTTGCCATCGCTGCGTTGCCCTGGCTGCTGATCGCGGGCGGGCTTGTGGTCGCCTACGG
CCTGTTTGCGACATTGGCGGACAATCTAGCGGACCGAAACATCCGGACGGGGTTCGGTTTCCTGTTCGACCGGGCGGGCT
TCGCGATTGGCGAAACGCTGATTGCTTACGCGCCTGGCGATTCCTATGCCGCGGCGCTGGCGGTGGGTCTTCTCAACACG
CTCCTGATATCGGCGCTCGGCATCATCTTCTCGACCTTGCTCGGCCTCGCGGTCTGCATGGCGCGCCTGTCGTCCAACTG
GCTGCTTGCGAGGCTCTCCGGCCTTTATATCGAGCTGGTTCGCAATATTCCCCTGCTGCTCCAGATGTTCGTCTGGTACG
CCGCGCTGCTGTTCGGTCTGCCCGGACCCGGCCCGGGCGCCGTCGGACCGTTCGACCTCGATAATCGGGGATTGCACCTC
CCCGCGCTCTCCTTGGCCGATCCGGGACGGCCGGTCTTGCTCATCGCGATCGTCGCCTGTGCGATCCTGCTGGGTGCCGT
GCGGCGAGGAGCCGTTCGCACGCGCACTGCGCTGGCCTTCGCCGGCATCTCCCTGGTGCCGCTCTTGCTGTGGGGCGGGA
TCGATCTGCCGCGGGCGGGGCGCTTCGGAACCGTCGGCGGACTGTCCTTCTCAACGGAGTTTCTGACTCTGGTCACCAGC
CTTTCGGTCTATGCCTCGGCCTATCTGGCCGAGATATTCCGCGGCGCGATCCTCGCCGTTCCAGCAGGGCAGAGCGAGGC
CGCCAAAGCGCTCGGCCTGTCGCCCGCGCAAACGATGGGACGGATCGTGATCCCGCAAGCGCTGCGCATTGCCATACCGC
CGATGACGAGCTGGCATCTCAACACGATCAAGAACAGCTCCCTGGGCGTCGCGATCGGATATCCCGAATTTGTCTCGGTG
GTCGATACCGTCATCAGCCAGACAGGTCAGGCGATCGAAGGCGTCGGTCTGATCGTCGCGACGTTTCTCCTGCTCTCGCT
GTCCTTGGCGTTCGTTACCGGCCGCTATGCCCGCCGGTTGGGCTGGACCGTTGCCGGGCAGCCCGGCCGCAGCATCCAGT
CGGCGCCCCTCGAACCCTTTCCGCTACGCTCGGCGGCGGCCTGGCCGTCGTGGATGCGGCGCAATCTGTTCAGAGGAGGA
CGCCAGTCGATACTGACCATCGCGATCCTCGCCATGACCGCGGCTTTCGTCGGCAAGGGACTCTCGTGGCTGCTGTTTGA
GGCGACATTCGCCGGGGGCGCGGCCGATTGCCGTTTGGCCAGCGGTGCCTGCTGGCCATTCCTCCGCGAAAATGCGCGGC
TTATATTGTTCGGAACCTATCCCGAAGCCGAGCAGTGGCGGTCCGCAGCGGCGGCGACGGCGCTGCTTTCCTGCCTCGCG
TTCTCCTTCGTCCCGCGATTTTGGCGTAGCCGCCTCGGCCTAGCCTGGCTCGGCGCGATCGCGGTGGCGGTACTTCTGCT
ACGAGGAGGATTCGCGGGCCTTTCCTATGTCCCGATGGAGAAGTGGAGCGGCCTGCCGGTCACATTGCTGCTCGCGAGCC
TTGCGGTGGTCGGCGCGTTTCCGCTGGCCATACTCCTCGCGTTCGGCCGCAGGTCGACGCGGCGCGGCATTCGCTGGCCG
AGCGTCGTCTTCATCGAGCTGGTTCGCGGAACGCCGCTGATCGGGGTGCTCTTCCTCGCTGCGGTCCTGTTTCCGCTGTT
CGTGCCCTCTTATCTCTCGATCGACAGCCTGCCGCGCGTCCAGCTCGCGCTCATATTCTTCACTGCCGCCTATATGGCCG
AGGTCATCCGGGGCGGCCTGCTGGCGGTTCCCGTCGGGCAGGCCGAGGCCGCGCACGCTCTCGGCCTCACCAAATGGCAG
GCGCGGCGCCATATCCTGTTGCCGCAGGCGCTGAAAGTCAGCGTACCCGGACTGGTCAACACTTCGATTAGCGAGGTGAA
GAACACGACGCTCGTCCTCATCGTCGGCGTCTTCGATTTGTTGCAGACGACCCGCCTCTCCTACGTCGAGGCGCAATGGC
GACCCTATTTCGCCGAAGCCTATCTTTTCACCGGGACAATCTTCTTCCTCCTCTGTTTCTCCCTGTCCCGGCTCAGCATG
AAGATCGAACGGAAACTAGACTATGCAGGATAA

Upstream 100 bases:

>100_bases
ATGGCGAAATCTTCGACCGGCACATTACGCCGCTCGGCGTCGAACGCGGACAGAATAAGCTCTATCGGGACGGCGGGCTG
ATCTACCCGTTGCCGATGCG

Downstream 100 bases:

>100_bases
TCATGACGGAAAATGGCTCGAGGAGCCGGCGAGCCCGAAAGGGCACGCTTGGCAGGATCCGACGCGTGCCGTGCACGGCG
GTCCCCGCCCGCGCGATCAG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 730; Mature: 729

Protein sequence:

>730_residues
MTHKHRRLAIAALPWLLIAGGLVVAYGLFATLADNLADRNIRTGFGFLFDRAGFAIGETLIAYAPGDSYAAALAVGLLNT
LLISALGIIFSTLLGLAVCMARLSSNWLLARLSGLYIELVRNIPLLLQMFVWYAALLFGLPGPGPGAVGPFDLDNRGLHL
PALSLADPGRPVLLIAIVACAILLGAVRRGAVRTRTALAFAGISLVPLLLWGGIDLPRAGRFGTVGGLSFSTEFLTLVTS
LSVYASAYLAEIFRGAILAVPAGQSEAAKALGLSPAQTMGRIVIPQALRIAIPPMTSWHLNTIKNSSLGVAIGYPEFVSV
VDTVISQTGQAIEGVGLIVATFLLLSLSLAFVTGRYARRLGWTVAGQPGRSIQSAPLEPFPLRSAAAWPSWMRRNLFRGG
RQSILTIAILAMTAAFVGKGLSWLLFEATFAGGAADCRLASGACWPFLRENARLILFGTYPEAEQWRSAAAATALLSCLA
FSFVPRFWRSRLGLAWLGAIAVAVLLLRGGFAGLSYVPMEKWSGLPVTLLLASLAVVGAFPLAILLAFGRRSTRRGIRWP
SVVFIELVRGTPLIGVLFLAAVLFPLFVPSYLSIDSLPRVQLALIFFTAAYMAEVIRGGLLAVPVGQAEAAHALGLTKWQ
ARRHILLPQALKVSVPGLVNTSISEVKNTTLVLIVGVFDLLQTTRLSYVEAQWRPYFAEAYLFTGTIFFLLCFSLSRLSM
KIERKLDYAG

Sequences:

>Translated_730_residues
MTHKHRRLAIAALPWLLIAGGLVVAYGLFATLADNLADRNIRTGFGFLFDRAGFAIGETLIAYAPGDSYAAALAVGLLNT
LLISALGIIFSTLLGLAVCMARLSSNWLLARLSGLYIELVRNIPLLLQMFVWYAALLFGLPGPGPGAVGPFDLDNRGLHL
PALSLADPGRPVLLIAIVACAILLGAVRRGAVRTRTALAFAGISLVPLLLWGGIDLPRAGRFGTVGGLSFSTEFLTLVTS
LSVYASAYLAEIFRGAILAVPAGQSEAAKALGLSPAQTMGRIVIPQALRIAIPPMTSWHLNTIKNSSLGVAIGYPEFVSV
VDTVISQTGQAIEGVGLIVATFLLLSLSLAFVTGRYARRLGWTVAGQPGRSIQSAPLEPFPLRSAAAWPSWMRRNLFRGG
RQSILTIAILAMTAAFVGKGLSWLLFEATFAGGAADCRLASGACWPFLRENARLILFGTYPEAEQWRSAAAATALLSCLA
FSFVPRFWRSRLGLAWLGAIAVAVLLLRGGFAGLSYVPMEKWSGLPVTLLLASLAVVGAFPLAILLAFGRRSTRRGIRWP
SVVFIELVRGTPLIGVLFLAAVLFPLFVPSYLSIDSLPRVQLALIFFTAAYMAEVIRGGLLAVPVGQAEAAHALGLTKWQ
ARRHILLPQALKVSVPGLVNTSISEVKNTTLVLIVGVFDLLQTTRLSYVEAQWRPYFAEAYLFTGTIFFLLCFSLSRLSM
KIERKLDYAG
>Mature_729_residues
THKHRRLAIAALPWLLIAGGLVVAYGLFATLADNLADRNIRTGFGFLFDRAGFAIGETLIAYAPGDSYAAALAVGLLNTL
LISALGIIFSTLLGLAVCMARLSSNWLLARLSGLYIELVRNIPLLLQMFVWYAALLFGLPGPGPGAVGPFDLDNRGLHLP
ALSLADPGRPVLLIAIVACAILLGAVRRGAVRTRTALAFAGISLVPLLLWGGIDLPRAGRFGTVGGLSFSTEFLTLVTSL
SVYASAYLAEIFRGAILAVPAGQSEAAKALGLSPAQTMGRIVIPQALRIAIPPMTSWHLNTIKNSSLGVAIGYPEFVSVV
DTVISQTGQAIEGVGLIVATFLLLSLSLAFVTGRYARRLGWTVAGQPGRSIQSAPLEPFPLRSAAAWPSWMRRNLFRGGR
QSILTIAILAMTAAFVGKGLSWLLFEATFAGGAADCRLASGACWPFLRENARLILFGTYPEAEQWRSAAAATALLSCLAF
SFVPRFWRSRLGLAWLGAIAVAVLLLRGGFAGLSYVPMEKWSGLPVTLLLASLAVVGAFPLAILLAFGRRSTRRGIRWPS
VVFIELVRGTPLIGVLFLAAVLFPLFVPSYLSIDSLPRVQLALIFFTAAYMAEVIRGGLLAVPVGQAEAAHALGLTKWQA
RRHILLPQALKVSVPGLVNTSISEVKNTTLVLIVGVFDLLQTTRLSYVEAQWRPYFAEAYLFTGTIFFLLCFSLSRLSMK
IERKLDYAG

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=351, Percent_Identity=45.014245014245, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI87082239, Length=361, Percent_Identity=41.2742382271468, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1788226, Length=186, Percent_Identity=34.4086021505376, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=30.2884615384615, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=28.6407766990291, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788645, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1786874, Length=223, Percent_Identity=30.0448430493274, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787087, Length=239, Percent_Identity=26.7782426778243, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 78205; Mature: 78073

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHKHRRLAIAALPWLLIAGGLVVAYGLFATLADNLADRNIRTGFGFLFDRAGFAIGETL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCHH
IAYAPGDSYAAALAVGLLNTLLISALGIIFSTLLGLAVCMARLSSNWLLARLSGLYIELV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RNIPLLLQMFVWYAALLFGLPGPGPGAVGPFDLDNRGLHLPALSLADPGRPVLLIAIVAC
HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
AILLGAVRRGAVRTRTALAFAGISLVPLLLWGGIDLPRAGRFGTVGGLSFSTEFLTLVTS
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LSVYASAYLAEIFRGAILAVPAGQSEAAKALGLSPAQTMGRIVIPQALRIAIPPMTSWHL
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCHHHHHCCEECCCHHHEECCCCCCCCH
NTIKNSSLGVAIGYPEFVSVVDTVISQTGQAIEGVGLIVATFLLLSLSLAFVTGRYARRL
HHCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWTVAGQPGRSIQSAPLEPFPLRSAAAWPSWMRRNLFRGGRQSILTIAILAMTAAFVGKG
CCEECCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
LSWLLFEATFAGGAADCRLASGACWPFLRENARLILFGTYPEAEQWRSAAAATALLSCLA
HHHHHHHHHHCCCCCCCEECCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
FSFVPRFWRSRLGLAWLGAIAVAVLLLRGGFAGLSYVPMEKWSGLPVTLLLASLAVVGAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH
PLAILLAFGRRSTRRGIRWPSVVFIELVRGTPLIGVLFLAAVLFPLFVPSYLSIDSLPRV
HHHHHHHHCCCHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
QLALIFFTAAYMAEVIRGGLLAVPVGQAEAAHALGLTKWQARRHILLPQALKVSVPGLVN
HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCHHHHHHCCCCCCHHHHEECCCHHC
TSISEVKNTTLVLIVGVFDLLQTTRLSYVEAQWRPYFAEAYLFTGTIFFLLCFSLSRLSM
CCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KIERKLDYAG
HHHHHCCCCC
>Mature Secondary Structure 
THKHRRLAIAALPWLLIAGGLVVAYGLFATLADNLADRNIRTGFGFLFDRAGFAIGETL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCHH
IAYAPGDSYAAALAVGLLNTLLISALGIIFSTLLGLAVCMARLSSNWLLARLSGLYIELV
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RNIPLLLQMFVWYAALLFGLPGPGPGAVGPFDLDNRGLHLPALSLADPGRPVLLIAIVAC
HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
AILLGAVRRGAVRTRTALAFAGISLVPLLLWGGIDLPRAGRFGTVGGLSFSTEFLTLVTS
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LSVYASAYLAEIFRGAILAVPAGQSEAAKALGLSPAQTMGRIVIPQALRIAIPPMTSWHL
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCHHHHHCCEECCCHHHEECCCCCCCCH
NTIKNSSLGVAIGYPEFVSVVDTVISQTGQAIEGVGLIVATFLLLSLSLAFVTGRYARRL
HHCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GWTVAGQPGRSIQSAPLEPFPLRSAAAWPSWMRRNLFRGGRQSILTIAILAMTAAFVGKG
CCEECCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
LSWLLFEATFAGGAADCRLASGACWPFLRENARLILFGTYPEAEQWRSAAAATALLSCLA
HHHHHHHHHHCCCCCCCEECCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
FSFVPRFWRSRLGLAWLGAIAVAVLLLRGGFAGLSYVPMEKWSGLPVTLLLASLAVVGAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH
PLAILLAFGRRSTRRGIRWPSVVFIELVRGTPLIGVLFLAAVLFPLFVPSYLSIDSLPRV
HHHHHHHHCCCHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
QLALIFFTAAYMAEVIRGGLLAVPVGQAEAAHALGLTKWQARRHILLPQALKVSVPGLVN
HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCHHHHHHCCCCCCHHHHEECCCHHC
TSISEVKNTTLVLIVGVFDLLQTTRLSYVEAQWRPYFAEAYLFTGTIFFLLCFSLSRLSM
CCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KIERKLDYAG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]