| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is bglIIM [H]
Identifier: 103487781
GI number: 103487781
Start: 2427469
End: 2428332
Strand: Direct
Name: bglIIM [H]
Synonym: Sala_2300
Alternate gene names: 103487781
Gene position: 2427469-2428332 (Clockwise)
Preceding gene: 103487780
Following gene: 103487782
Centisome position: 72.57
GC content: 53.12
Gene sequence:
>864_bases ATGCGCCGCAATACCGTCACCAAGCTGAAATCGGACCGTTCGGTATATATGGCTTGTCAGGACAATCTCGCTTTTATGCG CCCGCTGCCCGACGAGAGCATGAAGCTCATCGTGACCTCGCCGCCATACAATATAGGCAAAGCATACGAGCAACGCTCTC CTCTGGCAGAATACGTCAAGGGGCAAGCGCAAGTAATTTCGGAGTGTGTTCGGTTGCTTTCCAAGGGTGGGTCGCTCTGC TGGCAGGTTGGAAATCACGTTGACCGAGGCGAAATCTTCCCGCTTGATATGGTGCTTTACCCGATTTTCAAAGAGCACGG CCTCAACCTACGCAATCGGGTGATCTGGCATTTCGAGCATGGCTTGCACTGCTCCAAACGGTTGTCTGGCCGCTATGAGA CCATTCTCTGGTTCACAAAGGGTGATAGCTATCATTTCGACGTCGACCCCATCCGGGTTCCGGCCAAGTATCCGGGTAAG AAGCATTTTAAGGGGCCTAAAGCAGGGCAACTCTCCGGCAATCCCCTTGGGAAAAATCCTGGGGATGTGTGGATATTTCC CAACGTCAAATCCAATCACGTCGAGAAGACGAGTCATCCATGTCAGTTCCCTGTCGAACTGGTCGAGAGGCTAGTATTGG CATTGACTGAACCCGGTGACGCCGTATTTGATCCTTACATGGGGGTAGGCTCCTCTGTCGTTGCAGCTGCCATGCACGAT CGCATAGGCTATGGCTGTGACGTGGTATCGGAGTACGTCGACATTGCATGGCACCGGGTTCACGCATTGCGCGCTGGAAC TTTGAAAACTCGACCAATGAACAAGCCGGTTTATGATCCTAGCTTGCCGAAGGGCGGGCACTAA
Upstream 100 bases:
>100_bases ATCCAAGGAAATAGATCGAAATCGGTATGTTGCTTGCCACAAGGCTGATGACATGTTCCCCATATATTCTTATACGGTCG GAACCTTAGGAGAACGACCA
Downstream 100 bases:
>100_bases TGAGGATCGTTCAATACTATTCTCATCTTAACGGCTTCGAGTTCCTCAAGTATCACAAAGCCCACATCTGGGATGATCTC GAAGCCGTCGTAGCTGCTGT
Product: DNA methylase N-4/N-6
Products: NA
Alternate protein names: M.BglII; N(4)- cytosine-specific methyltransferase BglII [H]
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MRRNTVTKLKSDRSVYMACQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSPLAEYVKGQAQVISECVRLLSKGGSLC WQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEHGLHCSKRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGK KHFKGPKAGQLSGNPLGKNPGDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAMHD RIGYGCDVVSEYVDIAWHRVHALRAGTLKTRPMNKPVYDPSLPKGGH
Sequences:
>Translated_287_residues MRRNTVTKLKSDRSVYMACQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSPLAEYVKGQAQVISECVRLLSKGGSLC WQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEHGLHCSKRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGK KHFKGPKAGQLSGNPLGKNPGDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAMHD RIGYGCDVVSEYVDIAWHRVHALRAGTLKTRPMNKPVYDPSLPKGGH >Mature_287_residues MRRNTVTKLKSDRSVYMACQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSPLAEYVKGQAQVISECVRLLSKGGSLC WQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEHGLHCSKRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGK KHFKGPKAGQLSGNPLGKNPGDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAMHD RIGYGCDVVSEYVDIAWHRVHALRAGTLKTRPMNKPVYDPSLPKGGH
Specific function: This methylase recognizes the double-stranded sequence AGATCT, causes specific methylation on C-5 on both strands, and protects the DNA from cleavage by the BglII endonuclease [H]
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=249, Percent_Identity=30.9236947791165, Blast_Score=110, Evalue=8e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR017985 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.113 [H]
Molecular weight: Translated: 32293; Mature: 32293
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRNTVTKLKSDRSVYMACQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSPLAEYVK CCCCHHHHHCCCCEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHC GQAQVISECVRLLSKGGSLCWQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEH CHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEEEEECC GLHCSKRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGKKHFKGPKAGQLSGNPLGKNP CCCHHHHCCCCEEEEEEEECCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC GDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAMHD CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHH RIGYGCDVVSEYVDIAWHRVHALRAGTLKTRPMNKPVYDPSLPKGGH HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRRNTVTKLKSDRSVYMACQDNLAFMRPLPDESMKLIVTSPPYNIGKAYEQRSPLAEYVK CCCCHHHHHCCCCEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHHHHHHCCCHHHHHC GQAQVISECVRLLSKGGSLCWQVGNHVDRGEIFPLDMVLYPIFKEHGLNLRNRVIWHFEH CHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEEEEECC GLHCSKRLSGRYETILWFTKGDSYHFDVDPIRVPAKYPGKKHFKGPKAGQLSGNPLGKNP CCCHHHHCCCCEEEEEEEECCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC GDVWIFPNVKSNHVEKTSHPCQFPVELVERLVLALTEPGDAVFDPYMGVGSSVVAAAMHD CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHH RIGYGCDVVSEYVDIAWHRVHALRAGTLKTRPMNKPVYDPSLPKGGH HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9073062 [H]