| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487782
Identifier: 103487782
GI number: 103487782
Start: 2428332
End: 2428943
Strand: Direct
Name: 103487782
Synonym: Sala_2301
Alternate gene names: NA
Gene position: 2428332-2428943 (Clockwise)
Preceding gene: 103487781
Following gene: 103487788
Centisome position: 72.59
GC content: 52.61
Gene sequence:
>612_bases ATGAGGATCGTTCAATACTATTCTCATCTTAACGGCTTCGAGTTCCTCAAGTATCACAAAGCCCACATCTGGGATGATCT CGAAGCCGTCGTAGCTGCTGTCGATGCCGAAGCCTGTCGGACCAAGGCGTCAGCGGAGGCTCGGAAAGAAGGGCGTCTGC TATACTCCCCAGTGGATATGAACAAAGAGTTCGCGCGCCTATTTGCGGACCATCATTGGACCGAGCGACGGGTTACAAAC TGGCTGTCAGAGGACACCTCGCTATTGCGGGATATAATGTCCCTTGAACCGCAGGCGCAGAAGGAAATGATTGAGGCGCG AGGCCTTGAGCCGATTATGACCTACAATCAAACCGATTTCGTGAAGGATAGGGTAGCGGTCGAAATACAGTTCGGCAAAT ATGCGTTTGTCGCGCATGACCTGTTCGTTAAACATATGTCATTCTTCATTAGCGATGACATAGACGTCGGTATCGAGGTC GTGCCCATGAAGTCGATGGAACGCGAAATGTCTTCTGGGGTTCCCTACTACGAGCGGGACCTATTCAATCTCATGCGGCA GGGACGTGGCATTCCCGCGGTACCGATCATCTTGGTCGGCGTCGCGCCCTGA
Upstream 100 bases:
>100_bases TTGCATGGCACCGGGTTCACGCATTGCGCGCTGGAACTTTGAAAACTCGACCAATGAACAAGCCGGTTTATGATCCTAGC TTGCCGAAGGGCGGGCACTA
Downstream 100 bases:
>100_bases CCGCCGACCAGTCGCCATAGCCGCGAACGTCGCCTTCTTGTTAATCTACGCCCAAAAAATTTTCTGGCCGCCGACAGCTG CTAGGCAGCGGCTATTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MRIVQYYSHLNGFEFLKYHKAHIWDDLEAVVAAVDAEACRTKASAEARKEGRLLYSPVDMNKEFARLFADHHWTERRVTN WLSEDTSLLRDIMSLEPQAQKEMIEARGLEPIMTYNQTDFVKDRVAVEIQFGKYAFVAHDLFVKHMSFFISDDIDVGIEV VPMKSMEREMSSGVPYYERDLFNLMRQGRGIPAVPIILVGVAP
Sequences:
>Translated_203_residues MRIVQYYSHLNGFEFLKYHKAHIWDDLEAVVAAVDAEACRTKASAEARKEGRLLYSPVDMNKEFARLFADHHWTERRVTN WLSEDTSLLRDIMSLEPQAQKEMIEARGLEPIMTYNQTDFVKDRVAVEIQFGKYAFVAHDLFVKHMSFFISDDIDVGIEV VPMKSMEREMSSGVPYYERDLFNLMRQGRGIPAVPIILVGVAP >Mature_203_residues MRIVQYYSHLNGFEFLKYHKAHIWDDLEAVVAAVDAEACRTKASAEARKEGRLLYSPVDMNKEFARLFADHHWTERRVTN WLSEDTSLLRDIMSLEPQAQKEMIEARGLEPIMTYNQTDFVKDRVAVEIQFGKYAFVAHDLFVKHMSFFISDDIDVGIEV VPMKSMEREMSSGVPYYERDLFNLMRQGRGIPAVPIILVGVAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23464; Mature: 23464
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIVQYYSHLNGFEFLKYHKAHIWDDLEAVVAAVDAEACRTKASAEARKEGRLLYSPVDM CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC NKEFARLFADHHWTERRVTNWLSEDTSLLRDIMSLEPQAQKEMIEARGLEPIMTYNQTDF CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCHHH VKDRVAVEIQFGKYAFVAHDLFVKHMSFFISDDIDVGIEVVPMKSMEREMSSGVPYYERD HHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHHH LFNLMRQGRGIPAVPIILVGVAP HHHHHHCCCCCCCCCEEEEECCC >Mature Secondary Structure MRIVQYYSHLNGFEFLKYHKAHIWDDLEAVVAAVDAEACRTKASAEARKEGRLLYSPVDM CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC NKEFARLFADHHWTERRVTNWLSEDTSLLRDIMSLEPQAQKEMIEARGLEPIMTYNQTDF CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCHHH VKDRVAVEIQFGKYAFVAHDLFVKHMSFFISDDIDVGIEVVPMKSMEREMSSGVPYYERD HHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHHH LFNLMRQGRGIPAVPIILVGVAP HHHHHHCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA