| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487764
Identifier: 103487764
GI number: 103487764
Start: 2406345
End: 2406818
Strand: Reverse
Name: 103487764
Synonym: Sala_2283
Alternate gene names: NA
Gene position: 2406818-2406345 (Counterclockwise)
Preceding gene: 103487766
Following gene: 103487763
Centisome position: 71.95
GC content: 63.92
Gene sequence:
>474_bases ATGATGACCTACAAGATCAGCGGGCTCTCCCCCGACCTCTTTGTCCCCCTGTTCGCGATGGACGATGCCGAACTGGCGGC CAACAAGGCGCGGCGGATCACCGCGACCGCCGATCGCGGCTGGCCGTGCCGGATCAGTCTGGAGGATGCAAAGGCGGGCG AAGAGCTGATCCTGCTTCACCATGTCAGCCACGATGTCGAAACCCCGTTCCGCAGCGCCTATGCCATCTATGTGCGCCAG GGCGTCGAAACGGCGACCTTTTGCGACGCGCTGCCCCCGGCGTTCGCCGGGCGGACGATGGCCTTTCGCGGGTTCGGCGA CGACGGCATGTTGGTTGCGGCCAAGCTGGTTCCTGGCGAAGATGGCGACGCTGCAATCCGTTCCCTGTTCGCCGACCCTG CGATTGCCTATATCCACGCACAATATGCGACGAACGGCTGTTTCGCCGCGCGGATCGAAAGGGACGAGCCATGA
Upstream 100 bases:
>100_bases CATGGCGCGGCAGACTAGTCGAGCGAGTTTTGAACGCAAGCATCGGGACGCGCCTGGTCCGCCGCGCTGGCATCAACGGC GCAACGAACGAAAGGATGAT
Downstream 100 bases:
>100_bases GCCGCCACCTGCTGATGACCGACGACGAATGCTGGCGGGCGGTTCAGGCGCGTGACAAGGCGTTCGACGGGCGTTTCGTC ACCGGCGTGCTGACGACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MMTYKISGLSPDLFVPLFAMDDAELAANKARRITATADRGWPCRISLEDAKAGEELILLHHVSHDVETPFRSAYAIYVRQ GVETATFCDALPPAFAGRTMAFRGFGDDGMLVAAKLVPGEDGDAAIRSLFADPAIAYIHAQYATNGCFAARIERDEP
Sequences:
>Translated_157_residues MMTYKISGLSPDLFVPLFAMDDAELAANKARRITATADRGWPCRISLEDAKAGEELILLHHVSHDVETPFRSAYAIYVRQ GVETATFCDALPPAFAGRTMAFRGFGDDGMLVAAKLVPGEDGDAAIRSLFADPAIAYIHAQYATNGCFAARIERDEP >Mature_157_residues MMTYKISGLSPDLFVPLFAMDDAELAANKARRITATADRGWPCRISLEDAKAGEELILLHHVSHDVETPFRSAYAIYVRQ GVETATFCDALPPAFAGRTMAFRGFGDDGMLVAAKLVPGEDGDAAIRSLFADPAIAYIHAQYATNGCFAARIERDEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17055; Mature: 17055
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTYKISGLSPDLFVPLFAMDDAELAANKARRITATADRGWPCRISLEDAKAGEELILLH CEEEEECCCCCCCEEEEEECCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE HVSHDVETPFRSAYAIYVRQGVETATFCDALPPAFAGRTMAFRGFGDDGMLVAAKLVPGE ECCCCCCCCHHHHEEEEEECCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCC DGDAAIRSLFADPAIAYIHAQYATNGCFAARIERDEP CCHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCC >Mature Secondary Structure MMTYKISGLSPDLFVPLFAMDDAELAANKARRITATADRGWPCRISLEDAKAGEELILLH CEEEEECCCCCCCEEEEEECCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE HVSHDVETPFRSAYAIYVRQGVETATFCDALPPAFAGRTMAFRGFGDDGMLVAAKLVPGE ECCCCCCCCHHHHEEEEEECCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCC DGDAAIRSLFADPAIAYIHAQYATNGCFAARIERDEP CCHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA