Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487755

Identifier: 103487755

GI number: 103487755

Start: 2393954

End: 2395954

Strand: Reverse

Name: 103487755

Synonym: Sala_2274

Alternate gene names: NA

Gene position: 2395954-2393954 (Counterclockwise)

Preceding gene: 103487762

Following gene: 103487754

Centisome position: 71.62

GC content: 62.92

Gene sequence:

>2001_bases
ATGCGAGGGACCTGGATCAGCCGGCTGTGCGCCGGCACCAAATCGCTCATAAGCGACCAGCGCGGCAACGCCTTCATGCT
GACCGCCGCGGCGATCATCCCGGTGATCGGCTTTGTCGGTTCGGCGGTCGACATCGGCCGCGCCTATATGACGCAATTGC
GTTTGCAGCAGGCCTGCGATGCCGGCGTGCTCGCCGGGCGCCGCGCGATGGGCGGCGCCAGCTATGACGAAGCGGCGCAG
GCCGAAGCGAACAAGATGTTCAACTTCAACTTCCCCGAAGCCAAATATGGCGCGACGGGCATTCTCTTTTCGTCGCGTGC
GCTCAATGCCTCCGACGTCGAGGGACAGGCCTCGGCGGTGCTGCCGACCGAGCTGATGTTCATGTTCGGCAAGGAGGAGT
TCCGCCTGTCGGCCGATTGCACCGCAAAGCTCGAAATCTCGAACGTCGATGTCATGCTGGTGCTCGACGTCACCGGGTCG
ATGGCGCAGACCAACGCGGGCGACTCGGTCAACCGCATCACCGCGCTCAAAGACGCGACGATGGACTTTTTCGACACGCT
GACCAACGCCGATGTCGGCGACGGGCGGCTGCGCTTTGGCGTCGTGCCCTATAGTTCGACCGCGAATGTCGGCCAGATTC
TTCTCGCGAAAAATCCGGCGTGGTTGGCCGATACGGTCACGCTGCCGTCGCGGACGCCCATTTTCCGCGAAGTTTATACC
GAGACGGGAACCGAGACGAGCGACGACTATACCGACAGTCCGACGACCTATTCGTCAAACTGGACCAATGACGGCACCGT
ACCGGCAAGCAACAGCGCGGCCTGCGCGGCGCTGACGCCGCCGGCAAACACCACGCCGTCTCCGAGCGGATCGCCGGACT
ATAACCAGACGGGCCAATATGTCGACGGCGACACGCGCGTCACGACCTATGACACCGTTCAAACCTACACCTTCCGTACC
TATCGTTACGTCTGGTCCAGCAACCGGTGCCGCAGGCAGTATCGCAACGGCAATTTCACGCGCACCTATACCACGACGGT
CACCGAAACGAAGACCGACGTTTTCGACAATAAATACACCTATGAGGACCGCGTTTTCGACGTCAGCGGGGTGAAGAGCG
GTTCGGCGATCGTCACCGACACCGGCGATTCGGGAGTCAGCATCAGCCATAACTGGGGCGGGTGCCTGATCGAACGGGCA
ACGACCCCGTTCGACGCCGACGACACCGCGCCGTCGGACGCGCTAGACATGGATATCGACCTGGTGCCCGACGCCGATGC
CGATACGCAATGGCGGATCCTGATCCCCGAGATCGCCTTTCCGCGCGCGCGCCACCCCCAATATGCGCCGTCCAGCAGCG
ATCCGATGACGGTCAACGTGTTCAACAGCGATGGCACCCGGAACATCACGTCGGACACGAGTTCAAACGGTCGCTGGCAG
CGTTATTCCAAATATTGGGGCAGTGGCTGGGGCGTCTGCCCGGCGGCAGCGATGAAGCTGACGACGATGACGGCCAGCGA
CCGCGCAACCTTCAACACCTATGTCCAGTCGCTGCAACCGCTGGGCGGCACCTATCACGACGCCGGCATGGTCTGGGGCG
CGCGGCTGTTGTCGCCGACCGGGCTGTTCGCCGACGAAAATGCGACGGCGCCGAACGATCGCCCGATCAGCCGCCATATC
GTCTTCATGACCGACGGCGCCATGGCGCCGAACATGGGTAATCTGACCTTCCAGGGCTATGAGTTTCTGATGCACCGCGT
CGGCGGGACGAGCGACAGCGATCTGCGCGACCGCCACAATAACCGCTTCACGCAATTGTGCCGGGCGGCGCGGCAGCGCG
GGATCACCATCTGGGTCGTGTCCTTCGGGGTCGGCAGCAACGACAGCCTGAACAACTGCGCGTCGTCGGGCCAGGCGTTC
GAGGCCGACAATGCCGCCGAACTCAACGAACAGTTCCAGGCGATCGCGCGGCAGATTTCCAAGCTGAGGCTGGCGCAATG
A

Upstream 100 bases:

>100_bases
CGCCGCTGATTAGCATTTTGGTAAGCAGTCACCCCCTAGGTGCGAGTTTACCAGCGGCACATCGGTTGGGGAGTGTCGCG
GGCCGAAGAGGGGTTAGACC

Downstream 100 bases:

>100_bases
GCCGCGCGCACGCGCCCTTGCGCCGTCTGGTCCGCCGCCTGCGGACGAGCGAGCGCGGCACCGCCTTCATCGAATTCGCC
TTTACCGCGCCGGTGTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ
AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS
MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT
ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT
YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA
TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ
RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI
VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF
EADNAAELNEQFQAIARQISKLRLAQ

Sequences:

>Translated_666_residues
MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ
AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS
MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT
ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT
YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA
TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ
RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI
VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF
EADNAAELNEQFQAIARQISKLRLAQ
>Mature_666_residues
MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACDAGVLAGRRAMGGASYDEAAQ
AEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAVLPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGS
MAQTNAGDSVNRITALKDATMDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT
ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQYVDGDTRVTTYDTVQTYTFRT
YRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYTYEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERA
TTPFDADDTAPSDALDMDIDLVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ
RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPTGLFADENATAPNDRPISRHI
VFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHNNRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAF
EADNAAELNEQFQAIARQISKLRLAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72468; Mature: 72468

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACD
CCCHHHHHHHHCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
AGVLAGRRAMGGASYDEAAQAEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAV
CHHHHCCHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
LPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGSMAQTNAGDSVNRITALKDAT
CHHHHHHHHCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
MDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT
HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHH
ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQY
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE
VDGDTRVTTYDTVQTYTFRTYRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYT
ECCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHCCCCEEEEEEEEEECCHHHHCCCCEE
YEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERATTPFDADDTAPSDALDMDID
CCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
LVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ
ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHH
RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPT
HHHHHHCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
GLFADENATAPNDRPISRHIVFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHN
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHC
NRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAFEADNAAELNEQFQAIARQIS
HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KLRLAQ
HHHCCC
>Mature Secondary Structure
MRGTWISRLCAGTKSLISDQRGNAFMLTAAAIIPVIGFVGSAVDIGRAYMTQLRLQQACD
CCCHHHHHHHHCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
AGVLAGRRAMGGASYDEAAQAEANKMFNFNFPEAKYGATGILFSSRALNASDVEGQASAV
CHHHHCCHHCCCCCCHHHHHHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
LPTELMFMFGKEEFRLSADCTAKLEISNVDVMLVLDVTGSMAQTNAGDSVNRITALKDAT
CHHHHHHHHCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
MDFFDTLTNADVGDGRLRFGVVPYSSTANVGQILLAKNPAWLADTVTLPSRTPIFREVYT
HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHH
ETGTETSDDYTDSPTTYSSNWTNDGTVPASNSAACAALTPPANTTPSPSGSPDYNQTGQY
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCE
VDGDTRVTTYDTVQTYTFRTYRYVWSSNRCRRQYRNGNFTRTYTTTVTETKTDVFDNKYT
ECCCCEEEEECCEEEEEEEEEEEEECCHHHHHHHCCCCEEEEEEEEEECCHHHHCCCCEE
YEDRVFDVSGVKSGSAIVTDTGDSGVSISHNWGGCLIERATTPFDADDTAPSDALDMDID
CCCEEEEECCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
LVPDADADTQWRILIPEIAFPRARHPQYAPSSSDPMTVNVFNSDGTRNITSDTSSNGRWQ
ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHH
RYSKYWGSGWGVCPAAAMKLTTMTASDRATFNTYVQSLQPLGGTYHDAGMVWGARLLSPT
HHHHHHCCCCCCCHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
GLFADENATAPNDRPISRHIVFMTDGAMAPNMGNLTFQGYEFLMHRVGGTSDSDLRDRHN
CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHC
NRFTQLCRAARQRGITIWVVSFGVGSNDSLNNCASSGQAFEADNAAELNEQFQAIARQIS
HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KLRLAQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA