| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487749
Identifier: 103487749
GI number: 103487749
Start: 2386533
End: 2387246
Strand: Direct
Name: 103487749
Synonym: Sala_2268
Alternate gene names: NA
Gene position: 2386533-2387246 (Clockwise)
Preceding gene: 103487748
Following gene: 103487750
Centisome position: 71.34
GC content: 67.37
Gene sequence:
>714_bases ATGTCCGCTTTCGACGATCCGCTTCTCGACCGCCGCACCGCGGTGCTTGCGCTTTCGGGCGCCGCGCTGACGCTGATGGC CGCCACGCCCGCCAGAACGACCTGGTCGCGAACGGTGACGACCAGCCCGATCGGCGCCTATATCGTCGGCAATCCCGCGG CAAAGCTGCGGCTGGTCGAGTATTTCAGCTACACCTGCCACGTCTGCGCCGATTTCGCGAAGGCGGCGTCACTCCCGCTC AGGACGCAATATATCGACCCTGGACTTGTCCGCTTCGAATATCGCAACCTCGTGCGCGATCCCGTCGACATGACCGCGGC GCTGCTCGCGCGCGTCGGCGGCCCCAGCGCCTTCACGGACAATCATCAGGCGATCTTTGCCGCCTTCCCGACCTTCATCG CCAGGGTTCAGAAAGCCACCGACGCGCAAAAGTCCAGCTGGTTCGAGGGCAGCGTGGCGCAGCGCGCGCGCCGGATTGCG GCCGACACCGGCCTCGCCGCGCTGATGCGCGCGCGCGGCTATTCGGAGGCGCAGCTCACCGCCGCCCTCGACAGCGAAGT CGCGCAGGCCGAGCTTGTCGGCATGACCAACATTGGCCGCGCCGCCGACCGCGTCACCGGCACGCCCAGCTTTTTCATCA ATGGCCAGCGCGCCGATGTCGTCGCCTGGCCCGCGCTCAAATCGAAACTCGACGCCGCGCTCAAGGCTGCGTAG
Upstream 100 bases:
>100_bases CGCGACATTGGCGACCCGGAGCTGCGCACCGTGCTCGAACGCATGGCCGCGGGCCTCGCGGCGCCGCCGCGGCTCCCCAA GATCAGCTAGGGCCAACAGC
Downstream 100 bases:
>100_bases AAACCCCGCATTCCCGAACCCGTGGAGATGAATATATGACCGCATCGCTTCGCATCGCCCTTCTCGCTTCGCTCGGCGCG CTCGCGCTGGCCGGCTGCGG
Product: protein-disulfide isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPL RTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIA ADTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA
Sequences:
>Translated_237_residues MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPL RTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIA ADTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA >Mature_236_residues SAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVEYFSYTCHVCADFAKAASLPLR TQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTDNHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAA DTGLAALMRARGYSEAQLTAALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA
Specific function: May be required for disulfide bond formation in some proteins [H]
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR012335 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25358; Mature: 25227
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVE CCCCCCCHHHHHHEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHH YFSYTCHVCADFAKAASLPLRTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTD HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC NHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAADTGLAALMRARGYSEAQLT CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCEEECHHHHHHHHHHHHCC >Mature Secondary Structure SAFDDPLLDRRTAVLALSGAALTLMAATPARTTWSRTVTTSPIGAYIVGNPAAKLRLVE CCCCCCHHHHHHEEEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEECCCHHHHHHHH YFSYTCHVCADFAKAASLPLRTQYIDPGLVRFEYRNLVRDPVDMTAALLARVGGPSAFTD HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC NHQAIFAAFPTFIARVQKATDAQKSSWFEGSVAQRARRIAADTGLAALMRARGYSEAQLT CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AALDSEVAQAELVGMTNIGRAADRVTGTPSFFINGQRADVVAWPALKSKLDAALKAA HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCEEECHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA