| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487750
Identifier: 103487750
GI number: 103487750
Start: 2387282
End: 2388019
Strand: Direct
Name: 103487750
Synonym: Sala_2269
Alternate gene names: NA
Gene position: 2387282-2388019 (Clockwise)
Preceding gene: 103487749
Following gene: 103487751
Centisome position: 71.37
GC content: 66.12
Gene sequence:
>738_bases ATGACCGCATCGCTTCGCATCGCCCTTCTCGCTTCGCTCGGCGCGCTCGCGCTGGCCGGCTGCGGCGGCGGCGCCGATTC CGCCAAGGAGCAGGAGGTGATCGCCAAGGTCGCGCCGCCTGCGGGCAAGAGCTGGTCGCAGGTCGTCCGCGTCGATGGCG ACGGCGTCGTGATGGGCAACCCCGAAGCGCCGATCAAGCTCGAGGAGTTCGGCGCCTTCACTTGCGGGCACTGCGCCCAG TTTGCCAAGGATTCGCACGAGGAACTGAAACGCGATTTCGTCGACACCGGCCGCGTGTCGTACAAGCTGACGCCCTTCAT GCTCCACCCGATCGACGCGATCGCCGGCGCGATCGTCAAATGCACCGGTCCCGACCGCTTCTTCCCGCTCGCCGACGCGA CCTTCCTCGAACATGACGCCTTCATCGCAGGCGCGTCGAAGCCGCAGCCGGGAATCGAGGCGGCGATGCAGTTGCCGCCC GCGCAGCGCTTCATCGCGCTCGCGAAAACATGGGGGATCGACCAATTCTATCAGCAGCGCGGCGTGCCCGCGACGACGAT CCAGCAATGTCTCGGCAAGGTCGAAAATGTCGAGGCGGTCGAAAAGGGCACCAATGCGGGAATCGAGAAATATCAGATCA CCGGCACGCCCACCTTTGTGATCAACGGTCAGGTCGCCGAAGGCATTGCCGCCTGGGGCCCGCTGCGCGACCGCCTGCGC ACGATGGGCGCGCGCTGA
Upstream 100 bases:
>100_bases GCGCCGATGTCGTCGCCTGGCCCGCGCTCAAATCGAAACTCGACGCCGCGCTCAAGGCTGCGTAGAAACCCCGCATTCCC GAACCCGTGGAGATGAATAT
Downstream 100 bases:
>100_bases TCCTCCTTCGCCCTCCCCTTCAGGGGAGGGGCTTATGGGCTTGCACACCCCCCCACCGCGCGGCATGACAGCTCCATGGG GGATATGTGACGCTCAGGTT
Product: protein-disulfide isomerase
Products: NA
Alternate protein names: Protein-Disulfide Isomerase; Protein-Disulfide Isomerase-Like Protein; Dsba Oxidoreductase; DsbA Family ThiolDisulfide Interchange Protein; DsbA Oxidoreductase; ThiolDisulfide Interchange Protein DsbA Family; Thiol-Disulfide Oxidoreductase Protein; Thiol-Disulfide Oxidoreductase D; Dsba OxidoreductaseTat Pathway Signal; DSBA Family Oxidoreductase; Disulfide Isomerase; Periplasmic Thiol-Disulphide Interchange Protein; ThiolDisulfide Interchange Protein DsbA; Twin-Arginine Translocation Pathway Signal Protein
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTASLRIALLASLGALALAGCGGGADSAKEQEVIAKVAPPAGKSWSQVVRVDGDGVVMGNPEAPIKLEEFGAFTCGHCAQ FAKDSHEELKRDFVDTGRVSYKLTPFMLHPIDAIAGAIVKCTGPDRFFPLADATFLEHDAFIAGASKPQPGIEAAMQLPP AQRFIALAKTWGIDQFYQQRGVPATTIQQCLGKVENVEAVEKGTNAGIEKYQITGTPTFVINGQVAEGIAAWGPLRDRLR TMGAR
Sequences:
>Translated_245_residues MTASLRIALLASLGALALAGCGGGADSAKEQEVIAKVAPPAGKSWSQVVRVDGDGVVMGNPEAPIKLEEFGAFTCGHCAQ FAKDSHEELKRDFVDTGRVSYKLTPFMLHPIDAIAGAIVKCTGPDRFFPLADATFLEHDAFIAGASKPQPGIEAAMQLPP AQRFIALAKTWGIDQFYQQRGVPATTIQQCLGKVENVEAVEKGTNAGIEKYQITGTPTFVINGQVAEGIAAWGPLRDRLR TMGAR >Mature_244_residues TASLRIALLASLGALALAGCGGGADSAKEQEVIAKVAPPAGKSWSQVVRVDGDGVVMGNPEAPIKLEEFGAFTCGHCAQF AKDSHEELKRDFVDTGRVSYKLTPFMLHPIDAIAGAIVKCTGPDRFFPLADATFLEHDAFIAGASKPQPGIEAAMQLPPA QRFIALAKTWGIDQFYQQRGVPATTIQQCLGKVENVEAVEKGTNAGIEKYQITGTPTFVINGQVAEGIAAWGPLRDRLRT MGAR
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25995; Mature: 25864
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASLRIALLASLGALALAGCGGGADSAKEQEVIAKVAPPAGKSWSQVVRVDGDGVVMGN CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHEEEECCCEEEECC PEAPIKLEEFGAFTCGHCAQFAKDSHEELKRDFVDTGRVSYKLTPFMLHPIDAIAGAIVK CCCCEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCEECHHHHHCCEEEE CTGPDRFFPLADATFLEHDAFIAGASKPQPGIEAAMQLPPAQRFIALAKTWGIDQFYQQR ECCCCCEECCCCCHHHHCCCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHC GVPATTIQQCLGKVENVEAVEKGTNAGIEKYQITGTPTFVINGQVAEGIAAWGPLRDRLR CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH TMGAR HHCCC >Mature Secondary Structure TASLRIALLASLGALALAGCGGGADSAKEQEVIAKVAPPAGKSWSQVVRVDGDGVVMGN CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHEEEECCCEEEECC PEAPIKLEEFGAFTCGHCAQFAKDSHEELKRDFVDTGRVSYKLTPFMLHPIDAIAGAIVK CCCCEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCEECHHHHHCCEEEE CTGPDRFFPLADATFLEHDAFIAGASKPQPGIEAAMQLPPAQRFIALAKTWGIDQFYQQR ECCCCCEECCCCCHHHHCCCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHC GVPATTIQQCLGKVENVEAVEKGTNAGIEKYQITGTPTFVINGQVAEGIAAWGPLRDRLR CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH TMGAR HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA