Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487748

Identifier: 103487748

GI number: 103487748

Start: 2385926

End: 2386522

Strand: Direct

Name: 103487748

Synonym: Sala_2267

Alternate gene names: NA

Gene position: 2385926-2386522 (Clockwise)

Preceding gene: 103487744

Following gene: 103487749

Centisome position: 71.32

GC content: 70.52

Gene sequence:

>597_bases
ATGGCGTCGGGTATGACGAAACCCACGGGAGACGACGCACCCGCCAAAAAGGCGAAGACGAAGGGCGGCGCCAAAGTCGG
CGCAAAACCCGCGAAGGCGCCCGCGCGCCGCTACGAGCGCCCGCGCGGCGGCGAGGCGCGCGCGATATCCGATCTCGTCC
CCGAAATCGGCCGCACCGCCTTTCGCAAGTTCGGCTTCGTCCAGTCGTCGGTGGTCAGCCGCTGGCGCGAGATCGTCGGC
GACCGCCTCGCCGACGTGACGCAGCCCGCGATGATCCGCTTCCCCGTGGGGCAAAAGGCGGGCGGGACGCTGCACCTGAC
GATCAGCGGCGCACACGCGCCGATGCTCCAGCATGTCGCGCCCGACATCGTCGCCGCGGTCAACCGCTTCTTCGGCTATG
CCGCGATCGCCACCGTCCGCATGACGCATGGACAGGTCACTCCCGCCGCCCCCGTTCAGCCGCCAGCCATGCTGAAACCC
GTACCCGCCGAACTGGGGGACAGCCTGCGCGACATTGGCGACCCGGAGCTGCGCACCGTGCTCGAACGCATGGCCGCGGG
CCTCGCGGCGCCGCCGCGGCTCCCCAAGATCAGCTAG

Upstream 100 bases:

>100_bases
CGGCCTTGCGCAAGGCCGATGGCCCCCACCCCAACCCCTCCCCTGAAGGGGAGGGGCGATTCCATGCCGATAGTCTGGAC
GCTCACCCCCCGCCTATGGC

Downstream 100 bases:

>100_bases
GGCCAACAGCATGTCCGCTTTCGACGATCCGCTTCTCGACCGCCGCACCGCGGTGCTTGCGCTTTCGGGCGCCGCGCTGA
CGCTGATGGCCGCCACGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MASGMTKPTGDDAPAKKAKTKGGAKVGAKPAKAPARRYERPRGGEARAISDLVPEIGRTAFRKFGFVQSSVVSRWREIVG
DRLADVTQPAMIRFPVGQKAGGTLHLTISGAHAPMLQHVAPDIVAAVNRFFGYAAIATVRMTHGQVTPAAPVQPPAMLKP
VPAELGDSLRDIGDPELRTVLERMAAGLAAPPRLPKIS

Sequences:

>Translated_198_residues
MASGMTKPTGDDAPAKKAKTKGGAKVGAKPAKAPARRYERPRGGEARAISDLVPEIGRTAFRKFGFVQSSVVSRWREIVG
DRLADVTQPAMIRFPVGQKAGGTLHLTISGAHAPMLQHVAPDIVAAVNRFFGYAAIATVRMTHGQVTPAAPVQPPAMLKP
VPAELGDSLRDIGDPELRTVLERMAAGLAAPPRLPKIS
>Mature_197_residues
ASGMTKPTGDDAPAKKAKTKGGAKVGAKPAKAPARRYERPRGGEARAISDLVPEIGRTAFRKFGFVQSSVVSRWREIVGD
RLADVTQPAMIRFPVGQKAGGTLHLTISGAHAPMLQHVAPDIVAAVNRFFGYAAIATVRMTHGQVTPAAPVQPPAMLKPV
PAELGDSLRDIGDPELRTVLERMAAGLAAPPRLPKIS

Specific function: Unknown

COG id: COG5389

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20898; Mature: 20766

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGMTKPTGDDAPAKKAKTKGGAKVGAKPAKAPARRYERPRGGEARAISDLVPEIGRTA
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
FRKFGFVQSSVVSRWREIVGDRLADVTQPAMIRFPVGQKAGGTLHLTISGAHAPMLQHVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH
PDIVAAVNRFFGYAAIATVRMTHGQVTPAAPVQPPAMLKPVPAELGDSLRDIGDPELRTV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCHHHHHH
LERMAAGLAAPPRLPKIS
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ASGMTKPTGDDAPAKKAKTKGGAKVGAKPAKAPARRYERPRGGEARAISDLVPEIGRTA
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
FRKFGFVQSSVVSRWREIVGDRLADVTQPAMIRFPVGQKAGGTLHLTISGAHAPMLQHVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH
PDIVAAVNRFFGYAAIATVRMTHGQVTPAAPVQPPAMLKPVPAELGDSLRDIGDPELRTV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCHHHHHH
LERMAAGLAAPPRLPKIS
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA