| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is lip2 [H]
Identifier: 103487723
GI number: 103487723
Start: 2354583
End: 2355584
Strand: Reverse
Name: lip2 [H]
Synonym: Sala_2242
Alternate gene names: 103487723
Gene position: 2355584-2354583 (Counterclockwise)
Preceding gene: 103487728
Following gene: 103487722
Centisome position: 70.42
GC content: 70.36
Gene sequence:
>1002_bases ATGTTACGCGCTTGTGACGCGCCGCGCGGCGCTGTAGGGCGCGGCGGGATGGCGGCGCGGCTTTGCAAGGGACGGCGATT GATCAAGATCCTCTTCGTGCTGCTGCTGCTCGTGCTGCTGTTCGGCGGCGGCGCCAGGATGATCGCCGCGGGCGGCGCGA AATCGCTCAACCTGGCCGACCGGCTGCTGGGGCAGGGCGATGGCGCGCGGCTGCTGATCGCCGACCAGCCCTATGGCCGC GGGCCGCGCCAGTCGCTCGACATCTGGGTGCCGGGCAGCCTGCGCGAAGGCGACCGGCTGCCCGTCGTGGTCTTTTTCTA TGGCGGCGGCTGGAACAGCGGCGAGCGCGGCCATTATGGTTTCGCGGGACGCGCGCTCGCGCGGCAGGGCTTTGTCGTCG TGATCCCCGATTACCGGCTGGTGCCGAAGGCGCATTGGCCCGATTTTCTGGAAGACAGCGCCGCGGCGGTCGCGTGGACG CATGAGCATATCGCGAAGCTCGGCGGCGATCCCGACCGGATCGCGCTGATGGGGCATTCGGCGGGCGCCTATAATGCCGC GATGCTCGCGCTCGACCCGCAATGGTTGCGCGCCGCGAAAAGCGATCCGTCGATCGTCCGCGGCGTCGCGGGCCTTGCCG GGCCTTATGACTTCCTGCCGCTCGAAAAGGGCGGCCGCGCCGACAAGGCGATGGGCAAGGTTCGGCCGATCGAGCGGACG CAGCCGATCCATTTCGCGCGCGGCGACGCGCCGCCGCTTTGGCTTGCGAGCGGCGACGAGGATGATGTGGTGCGCCCGCG CAACAGCCAGAACCTCGCCGCCGCGATCGAGCGCGCGGGCGGGTCGGCGACGCTGCGCATCTATCCCGGCGTCGGCCACA CCGGGATCGTCATGGCGCTCGCCGCGCCCTTTCGCAACCGCGGGCCGGTGCTCGACGAAGCGAGCGATTTCCTTCGCGGT GTCACCGCGCGCCGCATCGCGCCGGTGGACGCAGAGCGATGA
Upstream 100 bases:
>100_bases GCTGCCGCTGTGGCTGTTGCAGACAAGGGCGGGGCGGGAAAAGGGGCAGGTCATCGCCTTCTTCTACGCGCGAGCGGACA AAAGGTCGCGCGCCGCGCCA
Downstream 100 bases:
>100_bases CCGGCCCGATAGCGGCGATCGTCCTCGCGGGCAGCCGTCCCGGCGCCGACCCGCTGCTGGCGGGCAGCGGGGTGCCCACC AAGGCGCTGCTCCCCGTCGC
Product: Alpha/beta hydrolase fold-3
Products: NA
Alternate protein names: Triacylglycerol lipase [H]
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MLRACDAPRGAVGRGGMAARLCKGRRLIKILFVLLLLVLLFGGGARMIAAGGAKSLNLADRLLGQGDGARLLIADQPYGR GPRQSLDIWVPGSLREGDRLPVVVFFYGGGWNSGERGHYGFAGRALARQGFVVVIPDYRLVPKAHWPDFLEDSAAAVAWT HEHIAKLGGDPDRIALMGHSAGAYNAAMLALDPQWLRAAKSDPSIVRGVAGLAGPYDFLPLEKGGRADKAMGKVRPIERT QPIHFARGDAPPLWLASGDEDDVVRPRNSQNLAAAIERAGGSATLRIYPGVGHTGIVMALAAPFRNRGPVLDEASDFLRG VTARRIAPVDAER
Sequences:
>Translated_333_residues MLRACDAPRGAVGRGGMAARLCKGRRLIKILFVLLLLVLLFGGGARMIAAGGAKSLNLADRLLGQGDGARLLIADQPYGR GPRQSLDIWVPGSLREGDRLPVVVFFYGGGWNSGERGHYGFAGRALARQGFVVVIPDYRLVPKAHWPDFLEDSAAAVAWT HEHIAKLGGDPDRIALMGHSAGAYNAAMLALDPQWLRAAKSDPSIVRGVAGLAGPYDFLPLEKGGRADKAMGKVRPIERT QPIHFARGDAPPLWLASGDEDDVVRPRNSQNLAAAIERAGGSATLRIYPGVGHTGIVMALAAPFRNRGPVLDEASDFLRG VTARRIAPVDAER >Mature_333_residues MLRACDAPRGAVGRGGMAARLCKGRRLIKILFVLLLLVLLFGGGARMIAAGGAKSLNLADRLLGQGDGARLLIADQPYGR GPRQSLDIWVPGSLREGDRLPVVVFFYGGGWNSGERGHYGFAGRALARQGFVVVIPDYRLVPKAHWPDFLEDSAAAVAWT HEHIAKLGGDPDRIALMGHSAGAYNAAMLALDPQWLRAAKSDPSIVRGVAGLAGPYDFLPLEKGGRADKAMGKVRPIERT QPIHFARGDAPPLWLASGDEDDVVRPRNSQNLAAAIERAGGSATLRIYPGVGHTGIVMALAAPFRNRGPVLDEASDFLRG VTARRIAPVDAER
Specific function: Has An Esterase Activity. Triacetyl Glycerol (Triacetin) Is A Substrate Of The Enzyme. [C]
COG id: COG0657
COG function: function code I; Esterase/lipase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'GDXG' lipolytic enzyme family [H]
Homologues:
Organism=Homo sapiens, GI192807282, Length=145, Percent_Identity=33.7931034482759, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224465228, Length=145, Percent_Identity=33.7931034482759, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310117651, Length=161, Percent_Identity=32.9192546583851, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI310117649, Length=161, Percent_Identity=32.9192546583851, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148536848, Length=161, Percent_Identity=32.9192546583851, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013094 - InterPro: IPR002168 [H]
Pfam domain/function: PF07859 Abhydrolase_3 [H]
EC number: =3.1.1.3 [H]
Molecular weight: Translated: 35524; Mature: 35524
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRACDAPRGAVGRGGMAARLCKGRRLIKILFVLLLLVLLFGGGARMIAAGGAKSLNLAD CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH RLLGQGDGARLLIADQPYGRGPRQSLDIWVPGSLREGDRLPVVVFFYGGGWNSGERGHYG HHHCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC FAGRALARQGFVVVIPDYRLVPKAHWPDFLEDSAAAVAWTHEHIAKLGGDPDRIALMGHS CHHHHHHHCCCEEEECCCEECCCCCCCHHHHCCCCEEEECHHHHHHHCCCCCEEEEEECC AGAYNAAMLALDPQWLRAAKSDPSIVRGVAGLAGPYDFLPLEKGGRADKAMGKVRPIERT CCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCC QPIHFARGDAPPLWLASGDEDDVVRPRNSQNLAAAIERAGGSATLRIYPGVGHTGIVMAL CCEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHH AAPFRNRGPVLDEASDFLRGVTARRIAPVDAER HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLRACDAPRGAVGRGGMAARLCKGRRLIKILFVLLLLVLLFGGGARMIAAGGAKSLNLAD CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH RLLGQGDGARLLIADQPYGRGPRQSLDIWVPGSLREGDRLPVVVFFYGGGWNSGERGHYG HHHCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC FAGRALARQGFVVVIPDYRLVPKAHWPDFLEDSAAAVAWTHEHIAKLGGDPDRIALMGHS CHHHHHHHCCCEEEECCCEECCCCCCCHHHHCCCCEEEECHHHHHHHCCCCCEEEEEECC AGAYNAAMLALDPQWLRAAKSDPSIVRGVAGLAGPYDFLPLEKGGRADKAMGKVRPIERT CCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCC QPIHFARGDAPPLWLASGDEDDVVRPRNSQNLAAAIERAGGSATLRIYPGVGHTGIVMAL CCEEEECCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHH AAPFRNRGPVLDEASDFLRGVTARRIAPVDAER HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1907455 [H]